Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AHNAK2 (AHNAK nucleoprotein 2)

Identity

Alias_namesC14orf78
chromosome 14 open reading frame 78
Other alias
HGNC (Hugo) AHNAK2
LocusID (NCBI) 113146
Atlas_Id 53708
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105403591 and ends at 105444694 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AHNAK2 (14q32.33) / AHNAK2 (14q32.33)PLD4 (14q32.33) / AHNAK2 (14q32.33)RHOA (3p21.31) / AHNAK2 (14q32.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AHNAK2   20125
Cards
Entrez_Gene (NCBI)AHNAK2  113146  AHNAK nucleoprotein 2
AliasesC14orf78
GeneCards (Weizmann)AHNAK2
Ensembl hg19 (Hinxton)ENSG00000185567 [Gene_View]  chr14:105403591-105444694 [Contig_View]  AHNAK2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000185567 [Gene_View]  chr14:105403591-105444694 [Contig_View]  AHNAK2 [Vega]
ICGC DataPortalENSG00000185567
TCGA cBioPortalAHNAK2
AceView (NCBI)AHNAK2
Genatlas (Paris)AHNAK2
WikiGenes113146
SOURCE (Princeton)AHNAK2
Genetics Home Reference (NIH)AHNAK2
Genomic and cartography
GoldenPath hg19 (UCSC)AHNAK2  -     chr14:105403591-105444694 -  14q32.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AHNAK2  -     14q32.33   [Description]    (hg38-Dec_2013)
EnsemblAHNAK2 - 14q32.33 [CytoView hg19]  AHNAK2 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIAHNAK2 [Mapview hg19]  AHNAK2 [Mapview hg38]
OMIM608570   
Gene and transcription
Genbank (Entrez)AB095939 AK094143 AK095704 AK126472 AL834367
RefSeq transcript (Entrez)NM_138420
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)AHNAK2
Cluster EST : UnigeneHs.441783 [ NCBI ]
CGAP (NCI)Hs.441783
Alternative Splicing GalleryENSG00000185567
Gene ExpressionAHNAK2 [ NCBI-GEO ]   AHNAK2 [ EBI - ARRAY_EXPRESS ]   AHNAK2 [ SEEK ]   AHNAK2 [ MEM ]
Gene Expression Viewer (FireBrowse)AHNAK2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113146
GTEX Portal (Tissue expression)AHNAK2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVF2
Splice isoforms : SwissVarQ8IVF2
PhosPhoSitePlusQ8IVF2
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)AHNAK2
DMDM Disease mutations113146
Blocks (Seattle)AHNAK2
PDB (SRS)4CN0   
PDB (PDBSum)4CN0   
PDB (IMB)4CN0   
PDB (RSDB)4CN0   
Structural Biology KnowledgeBase4CN0   
SCOP (Structural Classification of Proteins)4CN0   
CATH (Classification of proteins structures)4CN0   
SuperfamilyQ8IVF2
Human Protein AtlasENSG00000185567
Peptide AtlasQ8IVF2
IPIIPI00856045   IPI00885105   IPI00884904   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVF2
IntAct (EBI)Q8IVF2
FunCoupENSG00000185567
BioGRIDAHNAK2
STRING (EMBL)AHNAK2
ZODIACAHNAK2
Ontologies - Pathways
QuickGOQ8IVF2
Ontology : AmiGOplasma membrane repair  protein binding  nucleus  cytoplasm  cytoplasm  plasma membrane  Z disc  T-tubule  cytoplasmic vesicle membrane  sarcolemma  costamere  
Ontology : EGO-EBIplasma membrane repair  protein binding  nucleus  cytoplasm  cytoplasm  plasma membrane  Z disc  T-tubule  cytoplasmic vesicle membrane  sarcolemma  costamere  
NDEx NetworkAHNAK2
Atlas of Cancer Signalling NetworkAHNAK2
Wikipedia pathwaysAHNAK2
Orthology - Evolution
OrthoDB113146
GeneTree (enSembl)ENSG00000185567
Phylogenetic Trees/Animal Genes : TreeFamAHNAK2
HOVERGENQ8IVF2
HOGENOMQ8IVF2
Homologs : HomoloGeneAHNAK2
Homology/Alignments : Family Browser (UCSC)AHNAK2
Gene fusions - Rearrangements
Fusion : MitelmanPLD4/AHNAK2 [14q32.33/14q32.33]  [t(14;14)(q32;q32)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAHNAK2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AHNAK2
dbVarAHNAK2
ClinVarAHNAK2
1000_GenomesAHNAK2 
Exome Variant ServerAHNAK2
ExAC (Exome Aggregation Consortium)AHNAK2 (select the gene name)
Genetic variants : HAPMAP113146
Genomic Variants (DGV)AHNAK2 [DGVbeta]
DECIPHER (Syndromes)14:105403591-105444694  ENSG00000185567
CONAN: Copy Number AnalysisAHNAK2 
Mutations
ICGC Data PortalAHNAK2 
TCGA Data PortalAHNAK2 
Broad Tumor PortalAHNAK2
OASIS PortalAHNAK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAHNAK2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAHNAK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AHNAK2
DgiDB (Drug Gene Interaction Database)AHNAK2
DoCM (Curated mutations)AHNAK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AHNAK2 (select a term)
intoGenAHNAK2
Cancer3DAHNAK2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608570   
Orphanet
MedgenAHNAK2
Genetic Testing Registry AHNAK2
NextProtQ8IVF2 [Medical]
TSGene113146
GENETestsAHNAK2
Huge Navigator AHNAK2 [HugePedia]
snp3D : Map Gene to Disease113146
BioCentury BCIQAHNAK2
ClinGenAHNAK2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113146
Chemical/Pharm GKB GenePA162376085
Clinical trialAHNAK2
Miscellaneous
canSAR (ICR)AHNAK2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAHNAK2
EVEXAHNAK2
GoPubMedAHNAK2
iHOPAHNAK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:55:18 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.