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AHRR (aryl-hydrocarbon receptor repressor)

Identity

Alias_namesAHH
AHHR
aryl hydrocarbon receptor regulator
Alias_symbol (synonym)KIAA1234
bHLHe77
Other alias
HGNC (Hugo) AHRR
LocusID (NCBI) 57491
Atlas_Id 46457
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 304176 and ends at 438290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AHRR (5p15.33) / AHRR (5p15.33)AHRR (5p15.33) / NCOA2 (8q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Soft Tissues: Angiofibroma
Soft tissue tumors: an overview


External links

Nomenclature
HGNC (Hugo)AHRR   346
Cards
Entrez_Gene (NCBI)AHRR  57491  aryl-hydrocarbon receptor repressor
AliasesAHH; AHHR; bHLHe77
GeneCards (Weizmann)AHRR
Ensembl hg19 (Hinxton)ENSG00000063438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063438 [Gene_View]  chr5:304176-438290 [Contig_View]  AHRR [Vega]
ICGC DataPortalENSG00000063438
TCGA cBioPortalAHRR
AceView (NCBI)AHRR
Genatlas (Paris)AHRR
WikiGenes57491
SOURCE (Princeton)AHRR
Genetics Home Reference (NIH)AHRR
Genomic and cartography
GoldenPath hg38 (UCSC)AHRR  -     chr5:304176-438290 +  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AHRR  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblAHRR - 5p15.33 [CytoView hg19]  AHRR - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIAHRR [Mapview hg19]  AHRR [Mapview hg38]
OMIM606517   
Gene and transcription
Genbank (Entrez)AB033060 AK090508 AK127977 AK314472 BC035358
RefSeq transcript (Entrez)NM_001242412 NM_020731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AHRR
Cluster EST : UnigeneHs.50823 [ NCBI ]
CGAP (NCI)Hs.50823
Alternative Splicing GalleryENSG00000063438
Gene ExpressionAHRR [ NCBI-GEO ]   AHRR [ EBI - ARRAY_EXPRESS ]   AHRR [ SEEK ]   AHRR [ MEM ]
Gene Expression Viewer (FireBrowse)AHRR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57491
GTEX Portal (Tissue expression)AHRR
Protein : pattern, domain, 3D structure
UniProt/SwissProtA9YTQ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA9YTQ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA9YTQ3
Splice isoforms : SwissVarA9YTQ3
PhosPhoSitePlusA9YTQ3
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)    PAS (PS50112)   
Domains : Interpro (EBI)bHLH_dom    PAS    PAS_fold   
Domain families : Pfam (Sanger)HLH (PF00010)    PAS (PF00989)   
Domain families : Pfam (NCBI)pfam00010    pfam00989   
Domain families : Smart (EMBL)HLH (SM00353)  PAS (SM00091)  
Conserved Domain (NCBI)AHRR
DMDM Disease mutations57491
Blocks (Seattle)AHRR
SuperfamilyA9YTQ3
Human Protein AtlasENSG00000063438
Peptide AtlasA9YTQ3
HPRD07356
IPIIPI00893051   IPI00718806   IPI00893349   IPI00968054   IPI00967542   IPI00967227   IPI00984101   IPI00982017   IPI00978043   IPI00982577   
Protein Interaction databases
DIP (DOE-UCLA)A9YTQ3
IntAct (EBI)A9YTQ3
FunCoupENSG00000063438
BioGRIDAHRR
STRING (EMBL)AHRR
ZODIACAHRR
Ontologies - Pathways
QuickGOA9YTQ3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription factor binding  DNA binding  nucleoplasm  nucleoplasm  cytosol  transcription, DNA-templated  xenobiotic metabolic process  response to xenobiotic stimulus  nuclear aryl hydrocarbon receptor complex  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription factor binding  DNA binding  nucleoplasm  nucleoplasm  cytosol  transcription, DNA-templated  xenobiotic metabolic process  response to xenobiotic stimulus  nuclear aryl hydrocarbon receptor complex  positive regulation of transcription from RNA polymerase II promoter  protein dimerization activity  
NDEx NetworkAHRR
Atlas of Cancer Signalling NetworkAHRR
Wikipedia pathwaysAHRR
Orthology - Evolution
OrthoDB57491
GeneTree (enSembl)ENSG00000063438
Phylogenetic Trees/Animal Genes : TreeFamAHRR
HOVERGENA9YTQ3
HOGENOMA9YTQ3
Homologs : HomoloGeneAHRR
Homology/Alignments : Family Browser (UCSC)AHRR
Gene fusions - Rearrangements
Fusion : MitelmanAHRR/NCOA2 [5p15.33/8q13.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAHRR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AHRR
dbVarAHRR
ClinVarAHRR
1000_GenomesAHRR 
Exome Variant ServerAHRR
ExAC (Exome Aggregation Consortium)AHRR (select the gene name)
Genetic variants : HAPMAP57491
Genomic Variants (DGV)AHRR [DGVbeta]
DECIPHERAHRR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAHRR 
Mutations
ICGC Data PortalAHRR 
TCGA Data PortalAHRR 
Broad Tumor PortalAHRR
OASIS PortalAHRR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAHRR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAHRR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AHRR
DgiDB (Drug Gene Interaction Database)AHRR
DoCM (Curated mutations)AHRR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AHRR (select a term)
intoGenAHRR
Cancer3DAHRR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606517   
Orphanet
MedgenAHRR
Genetic Testing Registry AHRR
NextProtA9YTQ3 [Medical]
TSGene57491
GENETestsAHRR
Huge Navigator AHRR [HugePedia]
snp3D : Map Gene to Disease57491
BioCentury BCIQAHRR
ClinGenAHRR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57491
Chemical/Pharm GKB GenePA24639
Clinical trialAHRR
Miscellaneous
canSAR (ICR)AHRR (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAHRR
EVEXAHRR
GoPubMedAHRR
iHOPAHRR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:05:27 CEST 2017

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