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AIF1L (allograft inflammatory factor 1 like)

Identity

Alias_namesC9orf58
chromosome 9 open reading frame 58
allograft inflammatory factor 1-like
Alias_symbol (synonym)IBA2
FLJ12783
Other alias
HGNC (Hugo) AIF1L
LocusID (NCBI) 83543
Atlas_Id 60217
Location 9q34.12  [Link to chromosome band 9q34]
Location_base_pair Starts at 131096476 and ends at 131123152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AIF1L (9q34.12) / SYN2 (3p25.2)CDR1 (Xq27.1) / AIF1L (9q34.12)LOC100507412 (-) / AIF1L (9q34.12)
NUP214 (9q34.13) / AIF1L (9q34.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AIF1L   28904
Cards
Entrez_Gene (NCBI)AIF1L  83543  allograft inflammatory factor 1 like
AliasesC9orf58; IBA2
GeneCards (Weizmann)AIF1L
Ensembl hg19 (Hinxton)ENSG00000126878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126878 [Gene_View]  chr9:131096476-131123152 [Contig_View]  AIF1L [Vega]
ICGC DataPortalENSG00000126878
TCGA cBioPortalAIF1L
AceView (NCBI)AIF1L
Genatlas (Paris)AIF1L
WikiGenes83543
SOURCE (Princeton)AIF1L
Genetics Home Reference (NIH)AIF1L
Genomic and cartography
GoldenPath hg38 (UCSC)AIF1L  -     chr9:131096476-131123152 +  9q34.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AIF1L  -     9q34.12   [Description]    (hg19-Feb_2009)
EnsemblAIF1L - 9q34.12 [CytoView hg19]  AIF1L - 9q34.12 [CytoView hg38]
Mapping of homologs : NCBIAIF1L [Mapview hg19]  AIF1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022845 AK027181 AK057789 AK091912 AK128526
RefSeq transcript (Entrez)NM_001002260 NM_001185095 NM_001185096 NM_031426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AIF1L
Cluster EST : UnigeneHs.4944 [ NCBI ]
CGAP (NCI)Hs.4944
Alternative Splicing GalleryENSG00000126878
Gene ExpressionAIF1L [ NCBI-GEO ]   AIF1L [ EBI - ARRAY_EXPRESS ]   AIF1L [ SEEK ]   AIF1L [ MEM ]
Gene Expression Viewer (FireBrowse)AIF1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83543
GTEX Portal (Tissue expression)AIF1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQI0
Splice isoforms : SwissVarQ9BQI0
PhosPhoSitePlusQ9BQI0
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)Aif1-like    EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AIF1L
DMDM Disease mutations83543
Blocks (Seattle)AIF1L
PDB (SRS)2JJZ    2VTG   
PDB (PDBSum)2JJZ    2VTG   
PDB (IMB)2JJZ    2VTG   
PDB (RSDB)2JJZ    2VTG   
Structural Biology KnowledgeBase2JJZ    2VTG   
SCOP (Structural Classification of Proteins)2JJZ    2VTG   
CATH (Classification of proteins structures)2JJZ    2VTG   
SuperfamilyQ9BQI0
Human Protein AtlasENSG00000126878
Peptide AtlasQ9BQI0
HPRD12967
IPIIPI00034205   IPI00553214   IPI00549277   IPI00643837   IPI00922286   IPI00853027   IPI00643308   IPI00644825   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQI0
IntAct (EBI)Q9BQI0
FunCoupENSG00000126878
BioGRIDAIF1L
STRING (EMBL)AIF1L
ZODIACAIF1L
Ontologies - Pathways
QuickGOQ9BQI0
Ontology : AmiGOcalcium ion binding  cytoplasm  actin filament  focal adhesion  actin cytoskeleton  ruffle membrane  protein complex  actin filament binding  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  actin filament  focal adhesion  actin cytoskeleton  ruffle membrane  protein complex  actin filament binding  extracellular exosome  
NDEx NetworkAIF1L
Atlas of Cancer Signalling NetworkAIF1L
Wikipedia pathwaysAIF1L
Orthology - Evolution
OrthoDB83543
GeneTree (enSembl)ENSG00000126878
Phylogenetic Trees/Animal Genes : TreeFamAIF1L
HOVERGENQ9BQI0
HOGENOMQ9BQI0
Homologs : HomoloGeneAIF1L
Homology/Alignments : Family Browser (UCSC)AIF1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAIF1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AIF1L
dbVarAIF1L
ClinVarAIF1L
1000_GenomesAIF1L 
Exome Variant ServerAIF1L
ExAC (Exome Aggregation Consortium)AIF1L (select the gene name)
Genetic variants : HAPMAP83543
Genomic Variants (DGV)AIF1L [DGVbeta]
DECIPHERAIF1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAIF1L 
Mutations
ICGC Data PortalAIF1L 
TCGA Data PortalAIF1L 
Broad Tumor PortalAIF1L
OASIS PortalAIF1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAIF1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAIF1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AIF1L
DgiDB (Drug Gene Interaction Database)AIF1L
DoCM (Curated mutations)AIF1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AIF1L (select a term)
intoGenAIF1L
Cancer3DAIF1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAIF1L
Genetic Testing Registry AIF1L
NextProtQ9BQI0 [Medical]
TSGene83543
GENETestsAIF1L
Target ValidationAIF1L
Huge Navigator AIF1L [HugePedia]
snp3D : Map Gene to Disease83543
BioCentury BCIQAIF1L
ClinGenAIF1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83543
Chemical/Pharm GKB GenePA164715250
Clinical trialAIF1L
Miscellaneous
canSAR (ICR)AIF1L (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAIF1L
EVEXAIF1L
GoPubMedAIF1L
iHOPAIF1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:47 CEST 2017

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