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AIF1L (allograft inflammatory factor 1 like)

Identity

Alias (NCBI)C9orf58
IBA2
HGNC (Hugo) AIF1L
HGNC Alias symbIBA2
FLJ12783
HGNC Previous nameC9orf58
HGNC Previous namechromosome 9 open reading frame 58
 allograft inflammatory factor 1-like
LocusID (NCBI) 83543
Atlas_Id 57611
Location 9q34.12  [Link to chromosome band 9q34]
Location_base_pair Starts at 131096531 and ends at 131123144 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AIF1L (9q34.12)::SYN2 (3p25.2)CDR1 (Xq27.1)::AIF1L (9q34.12)LOC100507412 (-)::AIF1L (9q34.12)
NUP214 (9q34.13)::AIF1L (9q34.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)AIF1L   28904
Cards
Entrez_Gene (NCBI)AIF1L    allograft inflammatory factor 1 like
AliasesC9orf58; IBA2
GeneCards (Weizmann)AIF1L
Ensembl hg19 (Hinxton)ENSG00000126878 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126878 [Gene_View]  ENSG00000126878 [Sequence]  chr9:131096531-131123144 [Contig_View]  AIF1L [Vega]
ICGC DataPortalENSG00000126878
TCGA cBioPortalAIF1L
AceView (NCBI)AIF1L
Genatlas (Paris)AIF1L
SOURCE (Princeton)AIF1L
Genetics Home Reference (NIH)AIF1L
Genomic and cartography
GoldenPath hg38 (UCSC)AIF1L  -     chr9:131096531-131123144 +  9q34.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AIF1L  -     9q34.12   [Description]    (hg19-Feb_2009)
GoldenPathAIF1L - 9q34.12 [CytoView hg19]  AIF1L - 9q34.12 [CytoView hg38]
ImmunoBaseENSG00000126878
Genome Data Viewer NCBIAIF1L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK022845 AK027181 AK057789 AK091912 AK128526
RefSeq transcript (Entrez)NM_001002260 NM_001185095 NM_001185096 NM_031426
Consensus coding sequences : CCDS (NCBI)AIF1L
Gene ExpressionAIF1L [ NCBI-GEO ]   AIF1L [ EBI - ARRAY_EXPRESS ]   AIF1L [ SEEK ]   AIF1L [ MEM ]
Gene Expression Viewer (FireBrowse)AIF1L [ Firebrowse - Broad ]
GenevisibleExpression of AIF1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83543
GTEX Portal (Tissue expression)AIF1L
Human Protein AtlasENSG00000126878-AIF1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQI0
PhosPhoSitePlusQ9BQI0
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)Aif1-like    AIF1/AIF1L    EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AIF1L
PDB (RSDB)2JJZ    2VTG   
PDB Europe2JJZ    2VTG   
PDB (PDBSum)2JJZ    2VTG   
PDB (IMB)2JJZ    2VTG   
Structural Biology KnowledgeBase2JJZ    2VTG   
SCOP (Structural Classification of Proteins)2JJZ    2VTG   
CATH (Classification of proteins structures)2JJZ    2VTG   
SuperfamilyQ9BQI0
AlphaFold pdb e-kbQ9BQI0   
Human Protein Atlas [tissue]ENSG00000126878-AIF1L [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9BQI0
IntAct (EBI)Q9BQI0
BioGRIDAIF1L
STRING (EMBL)AIF1L
ZODIACAIF1L
Ontologies - Pathways
QuickGOQ9BQI0
Ontology : AmiGOcalcium ion binding  cytoplasm  actin filament  actin filament  focal adhesion  actin cytoskeleton  ruffle membrane  actin filament binding  actin filament binding  actin filament bundle assembly  extracellular exosome  ruffle assembly  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  actin filament  actin filament  focal adhesion  actin cytoskeleton  ruffle membrane  actin filament binding  actin filament binding  actin filament bundle assembly  extracellular exosome  ruffle assembly  
NDEx NetworkAIF1L
Atlas of Cancer Signalling NetworkAIF1L
Wikipedia pathwaysAIF1L
Orthology - Evolution
OrthoDB83543
GeneTree (enSembl)ENSG00000126878
Phylogenetic Trees/Animal Genes : TreeFamAIF1L
Homologs : HomoloGeneAIF1L
Homology/Alignments : Family Browser (UCSC)AIF1L
Gene fusions - Rearrangements
Fusion : QuiverAIF1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAIF1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AIF1L
dbVarAIF1L
ClinVarAIF1L
MonarchAIF1L
1000_GenomesAIF1L 
Exome Variant ServerAIF1L
GNOMAD BrowserENSG00000126878
Varsome BrowserAIF1L
ACMGAIF1L variants
VarityQ9BQI0
Genomic Variants (DGV)AIF1L [DGVbeta]
DECIPHERAIF1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAIF1L 
Mutations
ICGC Data PortalAIF1L 
TCGA Data PortalAIF1L 
Broad Tumor PortalAIF1L
OASIS PortalAIF1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAIF1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAIF1L
Mutations and Diseases : HGMDAIF1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaAIF1L
DgiDB (Drug Gene Interaction Database)AIF1L
DoCM (Curated mutations)AIF1L
CIViC (Clinical Interpretations of Variants in Cancer)AIF1L
Cancer3DAIF1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAIF1L
MedgenAIF1L
Genetic Testing Registry AIF1L
NextProtQ9BQI0 [Medical]
GENETestsAIF1L
Target ValidationAIF1L
Huge Navigator AIF1L [HugePedia]
ClinGenAIF1L
Clinical trials, drugs, therapy
MyCancerGenomeAIF1L
Protein Interactions : CTDAIF1L
Pharm GKB GenePA164715250
PharosQ9BQI0
Clinical trialAIF1L
Miscellaneous
canSAR (ICR)AIF1L
HarmonizomeAIF1L
ARCHS4AIF1L
DataMed IndexAIF1L
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAIF1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:21:54 CET 2022

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