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AIMP1 (aminoacyl tRNA synthetase complex-interacting multifunctional protein 1)

Identity

Alias_namesSCYE1
small inducible cytokine subfamily E
Alias_symbol (synonym)EMAPII
EMAP-2
p43
Other aliasEMAP2
HLD3
HGNC (Hugo) AIMP1
LocusID (NCBI) 9255
Atlas_Id 53103
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 107236767 and ends at 107270381 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AIMP1 (4q24) / CALM1 (14q32.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AIMP1   10648
Cards
Entrez_Gene (NCBI)AIMP1  9255  aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
AliasesEMAP2; EMAPII; HLD3; SCYE1; 
p43
GeneCards (Weizmann)AIMP1
Ensembl hg19 (Hinxton)ENSG00000164022 [Gene_View]  chr4:107236767-107270381 [Contig_View]  AIMP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164022 [Gene_View]  chr4:107236767-107270381 [Contig_View]  AIMP1 [Vega]
ICGC DataPortalENSG00000164022
TCGA cBioPortalAIMP1
AceView (NCBI)AIMP1
Genatlas (Paris)AIMP1
WikiGenes9255
SOURCE (Princeton)AIMP1
Genetics Home Reference (NIH)AIMP1
Genomic and cartography
GoldenPath hg19 (UCSC)AIMP1  -     chr4:107236767-107270381 +  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AIMP1  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblAIMP1 - 4q24 [CytoView hg19]  AIMP1 - 4q24 [CytoView hg38]
Mapping of homologs : NCBIAIMP1 [Mapview hg19]  AIMP1 [Mapview hg38]
OMIM260600   603605   
Gene and transcription
Genbank (Entrez)AK095951 AK297950 AK303965 AY527272 BC014051
RefSeq transcript (Entrez)NM_001142415 NM_001142416 NM_004757
RefSeq genomic (Entrez)NC_000004 NC_018915 NG_028166 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)AIMP1
Cluster EST : UnigeneHs.591680 [ NCBI ]
CGAP (NCI)Hs.591680
Alternative Splicing GalleryENSG00000164022
Gene ExpressionAIMP1 [ NCBI-GEO ]   AIMP1 [ EBI - ARRAY_EXPRESS ]   AIMP1 [ SEEK ]   AIMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)AIMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9255
GTEX Portal (Tissue expression)AIMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12904   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12904  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12904
Splice isoforms : SwissVarQ12904
PhosPhoSitePlusQ12904
Domaine pattern : Prosite (Expaxy)TRBD (PS50886)   
Domains : Interpro (EBI)NA-bd_OB-fold    tRNA-bd_dom   
Domain families : Pfam (Sanger)tRNA_bind (PF01588)   
Domain families : Pfam (NCBI)pfam01588   
Conserved Domain (NCBI)AIMP1
DMDM Disease mutations9255
Blocks (Seattle)AIMP1
PDB (SRS)1E7Z    1EUJ    1FL0    4R3Z   
PDB (PDBSum)1E7Z    1EUJ    1FL0    4R3Z   
PDB (IMB)1E7Z    1EUJ    1FL0    4R3Z   
PDB (RSDB)1E7Z    1EUJ    1FL0    4R3Z   
Structural Biology KnowledgeBase1E7Z    1EUJ    1FL0    4R3Z   
SCOP (Structural Classification of Proteins)1E7Z    1EUJ    1FL0    4R3Z   
CATH (Classification of proteins structures)1E7Z    1EUJ    1FL0    4R3Z   
SuperfamilyQ12904
Human Protein AtlasENSG00000164022
Peptide AtlasQ12904
HPRD04676
IPIIPI00006252   IPI00910647   IPI00793201   IPI00965185   
Protein Interaction databases
DIP (DOE-UCLA)Q12904
IntAct (EBI)Q12904
FunCoupENSG00000164022
BioGRIDAIMP1
STRING (EMBL)AIMP1
ZODIACAIMP1
Ontologies - Pathways
QuickGOQ12904
Ontology : AmiGOtRNA binding  angiogenesis  negative regulation of endothelial cell proliferation  cytokine activity  protein binding  extracellular space  nucleus  cytoplasm  endoplasmic reticulum  Golgi apparatus  cytosol  glucose metabolic process  tRNA aminoacylation for protein translation  apoptotic process  chemotaxis  inflammatory response  cell adhesion  signal transduction  cell-cell signaling  response to wounding  cell surface  membrane  aminoacyl-tRNA synthetase multienzyme complex  transport vesicle  protein homodimerization activity  leukocyte migration  GTPase binding  defense response to virus  
Ontology : EGO-EBItRNA binding  angiogenesis  negative regulation of endothelial cell proliferation  cytokine activity  protein binding  extracellular space  nucleus  cytoplasm  endoplasmic reticulum  Golgi apparatus  cytosol  glucose metabolic process  tRNA aminoacylation for protein translation  apoptotic process  chemotaxis  inflammatory response  cell adhesion  signal transduction  cell-cell signaling  response to wounding  cell surface  membrane  aminoacyl-tRNA synthetase multienzyme complex  transport vesicle  protein homodimerization activity  leukocyte migration  GTPase binding  defense response to virus  
NDEx NetworkAIMP1
Atlas of Cancer Signalling NetworkAIMP1
Wikipedia pathwaysAIMP1
Orthology - Evolution
OrthoDB9255
GeneTree (enSembl)ENSG00000164022
Phylogenetic Trees/Animal Genes : TreeFamAIMP1
HOVERGENQ12904
HOGENOMQ12904
Homologs : HomoloGeneAIMP1
Homology/Alignments : Family Browser (UCSC)AIMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAIMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AIMP1
dbVarAIMP1
ClinVarAIMP1
1000_GenomesAIMP1 
Exome Variant ServerAIMP1
ExAC (Exome Aggregation Consortium)AIMP1 (select the gene name)
Genetic variants : HAPMAP9255
Genomic Variants (DGV)AIMP1 [DGVbeta]
DECIPHER (Syndromes)4:107236767-107270381  ENSG00000164022
CONAN: Copy Number AnalysisAIMP1 
Mutations
ICGC Data PortalAIMP1 
TCGA Data PortalAIMP1 
Broad Tumor PortalAIMP1
OASIS PortalAIMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAIMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAIMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch AIMP1
DgiDB (Drug Gene Interaction Database)AIMP1
DoCM (Curated mutations)AIMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AIMP1 (select a term)
intoGenAIMP1
Cancer3DAIMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM260600    603605   
Orphanet20449    11804   
MedgenAIMP1
Genetic Testing Registry AIMP1
NextProtQ12904 [Medical]
TSGene9255
GENETestsAIMP1
Huge Navigator AIMP1 [HugePedia]
snp3D : Map Gene to Disease9255
BioCentury BCIQAIMP1
ClinGenAIMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9255
Chemical/Pharm GKB GenePA35578
Clinical trialAIMP1
Miscellaneous
canSAR (ICR)AIMP1 (select the gene name)
Probes
Litterature
PubMed91 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAIMP1
EVEXAIMP1
GoPubMedAIMP1
iHOPAIMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:51:59 CEST 2017

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