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AIPL1 (aryl hydrocarbon receptor interacting protein like 1)

Identity

Alias_namesLCA4
aryl hydrocarbon receptor-interacting protein-like 1
aryl hydrocarbon receptor interacting protein-like 1
Other aliasAIPL2
HGNC (Hugo) AIPL1
LocusID (NCBI) 23746
Atlas_Id 43661
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 6327057 and ends at 6338519 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AIPL1   359
Cards
Entrez_Gene (NCBI)AIPL1  23746  aryl hydrocarbon receptor interacting protein like 1
AliasesAIPL2; LCA4
GeneCards (Weizmann)AIPL1
Ensembl hg19 (Hinxton)ENSG00000129221 [Gene_View]  chr17:6327057-6338519 [Contig_View]  AIPL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000129221 [Gene_View]  chr17:6327057-6338519 [Contig_View]  AIPL1 [Vega]
ICGC DataPortalENSG00000129221
TCGA cBioPortalAIPL1
AceView (NCBI)AIPL1
Genatlas (Paris)AIPL1
WikiGenes23746
SOURCE (Princeton)AIPL1
Genetics Home Reference (NIH)AIPL1
Genomic and cartography
GoldenPath hg19 (UCSC)AIPL1  -     chr17:6327057-6338519 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AIPL1  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblAIPL1 - 17p13.2 [CytoView hg19]  AIPL1 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIAIPL1 [Mapview hg19]  AIPL1 [Mapview hg38]
OMIM268000   604392   604393   
Gene and transcription
Genbank (Entrez)AB593042 AB593043 AB593044 AB593045 AB593046
RefSeq transcript (Entrez)NM_001033054 NM_001033055 NM_001285399 NM_001285400 NM_001285401 NM_001285402 NM_001285403 NM_014336
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008474 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)AIPL1
Cluster EST : UnigeneHs.279887 [ NCBI ]
CGAP (NCI)Hs.279887
Alternative Splicing GalleryENSG00000129221
Gene ExpressionAIPL1 [ NCBI-GEO ]   AIPL1 [ EBI - ARRAY_EXPRESS ]   AIPL1 [ SEEK ]   AIPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)AIPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23746
GTEX Portal (Tissue expression)AIPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZN9
Splice isoforms : SwissVarQ9NZN9
PhosPhoSitePlusQ9NZN9
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)AIPL1    PPIase_FKBP_dom    TPR-contain_dom    TPR-like_helical_dom    TPR_2   
Domain families : Pfam (Sanger)FKBP_C (PF00254)    TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam00254    pfam07719   
Conserved Domain (NCBI)AIPL1
DMDM Disease mutations23746
Blocks (Seattle)AIPL1
SuperfamilyQ9NZN9
Human Protein AtlasENSG00000129221
Peptide AtlasQ9NZN9
HPRD05092
IPIIPI00303131   IPI00447756   IPI00166974   IPI01009410   IPI00470430   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZN9
IntAct (EBI)Q9NZN9
FunCoupENSG00000129221
BioGRIDAIPL1
STRING (EMBL)AIPL1
ZODIACAIPL1
Ontologies - Pathways
QuickGOQ9NZN9
Ontology : AmiGOretina homeostasis  photoreceptor inner segment  farnesylated protein binding  protein binding  nucleus  cytoplasm  protein folding  visual perception  phototransduction, visible light  protein farnesylation  regulation of cGMP metabolic process  negative regulation of apoptotic process  unfolded protein binding  
Ontology : EGO-EBIretina homeostasis  photoreceptor inner segment  farnesylated protein binding  protein binding  nucleus  cytoplasm  protein folding  visual perception  phototransduction, visible light  protein farnesylation  regulation of cGMP metabolic process  negative regulation of apoptotic process  unfolded protein binding  
NDEx NetworkAIPL1
Atlas of Cancer Signalling NetworkAIPL1
Wikipedia pathwaysAIPL1
Orthology - Evolution
OrthoDB23746
GeneTree (enSembl)ENSG00000129221
Phylogenetic Trees/Animal Genes : TreeFamAIPL1
HOVERGENQ9NZN9
HOGENOMQ9NZN9
Homologs : HomoloGeneAIPL1
Homology/Alignments : Family Browser (UCSC)AIPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAIPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AIPL1
dbVarAIPL1
ClinVarAIPL1
1000_GenomesAIPL1 
Exome Variant ServerAIPL1
ExAC (Exome Aggregation Consortium)AIPL1 (select the gene name)
Genetic variants : HAPMAP23746
Genomic Variants (DGV)AIPL1 [DGVbeta]
DECIPHER (Syndromes)17:6327057-6338519  ENSG00000129221
CONAN: Copy Number AnalysisAIPL1 
Mutations
ICGC Data PortalAIPL1 
TCGA Data PortalAIPL1 
Broad Tumor PortalAIPL1
OASIS PortalAIPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAIPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAIPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch AIPL1
DgiDB (Drug Gene Interaction Database)AIPL1
DoCM (Curated mutations)AIPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AIPL1 (select a term)
intoGenAIPL1
Cancer3DAIPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM268000    604392    604393   
Orphanet1843    3243   
MedgenAIPL1
Genetic Testing Registry AIPL1
NextProtQ9NZN9 [Medical]
TSGene23746
GENETestsAIPL1
Huge Navigator AIPL1 [HugePedia]
snp3D : Map Gene to Disease23746
BioCentury BCIQAIPL1
ClinGenAIPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23746
Chemical/Pharm GKB GenePA24653
Clinical trialAIPL1
Miscellaneous
canSAR (ICR)AIPL1 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAIPL1
EVEXAIPL1
GoPubMedAIPL1
iHOPAIPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:52:00 CEST 2017

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