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AJUBA (ajuba LIM protein)

Identity

Alias_namesJUB
jub
Alias_symbol (synonym)MGC15563
Other alias
HGNC (Hugo) AJUBA
LocusID (NCBI) 84962
Atlas_Id 53655
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23447821 and ends at 23451851 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AJUBA (14q11.2) / BAZ1A (14q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AJUBA   20250
Cards
Entrez_Gene (NCBI)AJUBA  84962  ajuba LIM protein
AliasesJUB
GeneCards (Weizmann)AJUBA
Ensembl hg19 (Hinxton)ENSG00000129474 [Gene_View]  chr14:23447821-23451851 [Contig_View]  AJUBA [Vega]
Ensembl hg38 (Hinxton)ENSG00000129474 [Gene_View]  chr14:23447821-23451851 [Contig_View]  AJUBA [Vega]
ICGC DataPortalENSG00000129474
TCGA cBioPortalAJUBA
AceView (NCBI)AJUBA
Genatlas (Paris)AJUBA
WikiGenes84962
SOURCE (Princeton)AJUBA
Genetics Home Reference (NIH)AJUBA
Genomic and cartography
GoldenPath hg19 (UCSC)AJUBA  -     chr14:23447821-23451851 -  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AJUBA  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblAJUBA - 14q11.2 [CytoView hg19]  AJUBA - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIAJUBA [Mapview hg19]  AJUBA [Mapview hg38]
OMIM609066   
Gene and transcription
Genbank (Entrez)AA909473 AK025567 AK096128 AW615335 AY169959
RefSeq transcript (Entrez)NM_001289097 NM_032876 NM_198086
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)AJUBA
Cluster EST : UnigeneHs.655832 [ NCBI ]
CGAP (NCI)Hs.655832
Alternative Splicing GalleryENSG00000129474
Gene ExpressionAJUBA [ NCBI-GEO ]   AJUBA [ EBI - ARRAY_EXPRESS ]   AJUBA [ SEEK ]   AJUBA [ MEM ]
Gene Expression Viewer (FireBrowse)AJUBA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84962
GTEX Portal (Tissue expression)AJUBA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IF1
Splice isoforms : SwissVarQ96IF1
PhosPhoSitePlusQ96IF1
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)AJUBA
DMDM Disease mutations84962
Blocks (Seattle)AJUBA
SuperfamilyQ96IF1
Human Protein AtlasENSG00000129474
Peptide AtlasQ96IF1
HPRD16426
IPIIPI00063605   IPI01025513   IPI01025625   IPI01024804   IPI00377200   
Protein Interaction databases
DIP (DOE-UCLA)Q96IF1
IntAct (EBI)Q96IF1
FunCoupENSG00000129474
BioGRIDAJUBA
STRING (EMBL)AJUBA
ZODIACAJUBA
Ontologies - Pathways
QuickGOQ96IF1
Ontology : AmiGOG2/M transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  cytoplasmic mRNA processing body  response to hypoxia  chromatin binding  transcription corepressor activity  protein binding  nucleus  transcription factor complex  microtubule organizing center  cytosol  plasma membrane  cell-cell junction  focal adhesion  transcription, DNA-templated  zinc ion binding  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  lamellipodium  lamellipodium assembly  regulation of cell migration  positive regulation of cellular biosynthetic process  positive regulation of protein complex assembly  negative regulation of kinase activity  cellular protein localization  gene silencing by miRNA  wound healing, spreading of epidermal cells  negative regulation of hippo signaling  regulation of GTPase activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of MAP kinase activity  alpha-catenin binding  glycerophospholipid biosynthetic process  focal adhesion assembly  actin filament binding  regulation of cellular response to hypoxia  positive regulation of gene silencing by miRNA  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  negative regulation of transcription from RNA polymerase II promoter  cytoplasmic mRNA processing body  response to hypoxia  chromatin binding  transcription corepressor activity  protein binding  nucleus  transcription factor complex  microtubule organizing center  cytosol  plasma membrane  cell-cell junction  focal adhesion  transcription, DNA-templated  zinc ion binding  calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  lamellipodium  lamellipodium assembly  regulation of cell migration  positive regulation of cellular biosynthetic process  positive regulation of protein complex assembly  negative regulation of kinase activity  cellular protein localization  gene silencing by miRNA  wound healing, spreading of epidermal cells  negative regulation of hippo signaling  regulation of GTPase activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of MAP kinase activity  alpha-catenin binding  glycerophospholipid biosynthetic process  focal adhesion assembly  actin filament binding  regulation of cellular response to hypoxia  positive regulation of gene silencing by miRNA  
Pathways : KEGGHippo signaling pathway   
NDEx NetworkAJUBA
Atlas of Cancer Signalling NetworkAJUBA
Wikipedia pathwaysAJUBA
Orthology - Evolution
OrthoDB84962
GeneTree (enSembl)ENSG00000129474
Phylogenetic Trees/Animal Genes : TreeFamAJUBA
HOVERGENQ96IF1
HOGENOMQ96IF1
Homologs : HomoloGeneAJUBA
Homology/Alignments : Family Browser (UCSC)AJUBA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAJUBA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AJUBA
dbVarAJUBA
ClinVarAJUBA
1000_GenomesAJUBA 
Exome Variant ServerAJUBA
ExAC (Exome Aggregation Consortium)AJUBA (select the gene name)
Genetic variants : HAPMAP84962
Genomic Variants (DGV)AJUBA [DGVbeta]
DECIPHER (Syndromes)14:23447821-23451851  ENSG00000129474
CONAN: Copy Number AnalysisAJUBA 
Mutations
ICGC Data PortalAJUBA 
TCGA Data PortalAJUBA 
Broad Tumor PortalAJUBA
OASIS PortalAJUBA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAJUBA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AJUBA
DgiDB (Drug Gene Interaction Database)AJUBA
DoCM (Curated mutations)AJUBA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AJUBA (select a term)
intoGenAJUBA
Cancer3DAJUBA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609066   
Orphanet
MedgenAJUBA
Genetic Testing Registry AJUBA
NextProtQ96IF1 [Medical]
TSGene84962
GENETestsAJUBA
Huge Navigator AJUBA [HugePedia]
snp3D : Map Gene to Disease84962
BioCentury BCIQAJUBA
ClinGenAJUBA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84962
Chemical/Pharm GKB GenePA134978308
Clinical trialAJUBA
Miscellaneous
canSAR (ICR)AJUBA (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAJUBA
EVEXAJUBA
GoPubMedAJUBA
iHOPAJUBA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:55:22 CET 2017

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