Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AKAP17A (A-kinase anchoring protein 17A)

Identity

Alias_namesCXYorf3
SFRS17A
chromosome X and Y open reading frame 3
splicing factor, arginine/serine-rich 17A
A kinase (PRKA) anchor protein 17A
Alias_symbol (synonym)XE7
XE7Y
DXYS155E
MGC39904
721P
CCDC133
Other aliasAKAP-17A
PRKA17A
HGNC (Hugo) AKAP17A
LocusID (NCBI) 8227
Atlas_Id 60225
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1591593 and ends at 1602518 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKAP17A   18783
Cards
Entrez_Gene (NCBI)AKAP17A  8227  A-kinase anchoring protein 17A
Aliases721P; AKAP-17A; CCDC133; CXYorf3; 
DXYS155E; PRKA17A; SFRS17A; XE7; XE7Y
GeneCards (Weizmann)AKAP17A
Ensembl hg19 (Hinxton)ENSG00000197976 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197976 [Gene_View]  chrX:1591593-1602518 [Contig_View]  AKAP17A [Vega]
ICGC DataPortalENSG00000197976
TCGA cBioPortalAKAP17A
AceView (NCBI)AKAP17A
Genatlas (Paris)AKAP17A
WikiGenes8227
SOURCE (Princeton)AKAP17A
Genetics Home Reference (NIH)AKAP17A
Genomic and cartography
GoldenPath hg38 (UCSC)AKAP17A  -     chrX:1591593-1602518 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKAP17A  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblAKAP17A - Xp22.33 [CytoView hg19]  AKAP17A - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIAKAP17A [Mapview hg19]  AKAP17A [Mapview hg38]
OMIM312095   465000   
Gene and transcription
Genbank (Entrez)AK308367 BC015800 BC016935 BC028151 BC110496
RefSeq transcript (Entrez)NM_005088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKAP17A
Cluster EST : UnigeneHs.522572 [ NCBI ]
CGAP (NCI)Hs.522572
Alternative Splicing GalleryENSG00000197976
Gene ExpressionAKAP17A [ NCBI-GEO ]   AKAP17A [ EBI - ARRAY_EXPRESS ]   AKAP17A [ SEEK ]   AKAP17A [ MEM ]
Gene Expression Viewer (FireBrowse)AKAP17A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8227
GTEX Portal (Tissue expression)AKAP17A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02040
Splice isoforms : SwissVarQ02040
PhosPhoSitePlusQ02040
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AKAP17A
DMDM Disease mutations8227
Blocks (Seattle)AKAP17A
SuperfamilyQ02040
Human Protein AtlasENSG00000197976
Peptide AtlasQ02040
HPRD02419
IPIIPI00024024   IPI00845316   IPI00643565   
Protein Interaction databases
DIP (DOE-UCLA)Q02040
IntAct (EBI)Q02040
FunCoupENSG00000197976
BioGRIDAKAP17A
STRING (EMBL)AKAP17A
ZODIACAKAP17A
Ontologies - Pathways
QuickGOQ02040
Ontology : AmiGORNA binding  protein binding  nucleus  spliceosomal complex  cytosol  regulation of transcription, DNA-templated  mRNA processing  signal transduction  RNA splicing  nuclear speck  B cell activation  regulation of RNA splicing  protein kinase A binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  spliceosomal complex  cytosol  regulation of transcription, DNA-templated  mRNA processing  signal transduction  RNA splicing  nuclear speck  B cell activation  regulation of RNA splicing  protein kinase A binding  
NDEx NetworkAKAP17A
Atlas of Cancer Signalling NetworkAKAP17A
Wikipedia pathwaysAKAP17A
Orthology - Evolution
OrthoDB8227
GeneTree (enSembl)ENSG00000197976
Phylogenetic Trees/Animal Genes : TreeFamAKAP17A
HOVERGENQ02040
HOGENOMQ02040
Homologs : HomoloGeneAKAP17A
Homology/Alignments : Family Browser (UCSC)AKAP17A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKAP17A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKAP17A
dbVarAKAP17A
ClinVarAKAP17A
1000_GenomesAKAP17A 
Exome Variant ServerAKAP17A
ExAC (Exome Aggregation Consortium)AKAP17A (select the gene name)
Genetic variants : HAPMAP8227
Genomic Variants (DGV)AKAP17A [DGVbeta]
DECIPHERAKAP17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKAP17A 
Mutations
ICGC Data PortalAKAP17A 
TCGA Data PortalAKAP17A 
Broad Tumor PortalAKAP17A
OASIS PortalAKAP17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKAP17A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKAP17A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AKAP17A
DgiDB (Drug Gene Interaction Database)AKAP17A
DoCM (Curated mutations)AKAP17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKAP17A (select a term)
intoGenAKAP17A
Cancer3DAKAP17A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM312095    465000   
Orphanet
MedgenAKAP17A
Genetic Testing Registry AKAP17A
NextProtQ02040 [Medical]
TSGene8227
GENETestsAKAP17A
Huge Navigator AKAP17A [HugePedia]
snp3D : Map Gene to Disease8227
BioCentury BCIQAKAP17A
ClinGenAKAP17A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8227
Chemical/Pharm GKB GenePA162402969
Clinical trialAKAP17A
Miscellaneous
canSAR (ICR)AKAP17A (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKAP17A
EVEXAKAP17A
GoPubMedAKAP17A
iHOPAKAP17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 10:59:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.