Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AKAP17A (A-kinase anchoring protein 17A)

Identity

Alias (NCBI)721P
AKAP-17A
CCDC133
CXYorf3
DXYS155E
PRKA17A
SFRS17A
XE7
XE7Y
HGNC (Hugo) AKAP17A
HGNC Alias symbXE7
XE7Y
DXYS155E
MGC39904
721P
CCDC133
HGNC Previous nameCXYorf3
 SFRS17A
HGNC Previous namechromosome X and Y open reading frame 3
 splicing factor, arginine/serine-rich 17A
 A kinase (PRKA) anchor protein 17A
LocusID (NCBI) 8227
Atlas_Id 60225
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1591593 and ends at 1602518 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)AKAP17A   18783
Cards
Entrez_Gene (NCBI)AKAP17A    A-kinase anchoring protein 17A
Aliases721P; AKAP-17A; CCDC133; CXYorf3; 
DXYS155E; PRKA17A; SFRS17A; XE7; XE7Y
GeneCards (Weizmann)AKAP17A
Ensembl hg19 (Hinxton)ENSG00000197976 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197976 [Gene_View]  ENSG00000197976 [Sequence]  chrX:1591593-1602518 [Contig_View]  AKAP17A [Vega]
ICGC DataPortalENSG00000197976
TCGA cBioPortalAKAP17A
AceView (NCBI)AKAP17A
Genatlas (Paris)AKAP17A
SOURCE (Princeton)AKAP17A
Genetics Home Reference (NIH)AKAP17A
Genomic and cartography
GoldenPath hg38 (UCSC)AKAP17A  -     chrX:1591593-1602518 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKAP17A  -     Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPathAKAP17A - Xp22.33 [CytoView hg19]  AKAP17A - Xp22.33 [CytoView hg38]
ImmunoBaseENSG00000197976
genome Data Viewer NCBIAKAP17A [Mapview hg19]  
OMIM312095   465000   
Gene and transcription
Genbank (Entrez)AK308367 BC015800 BC016935 BC028151 BC110496
RefSeq transcript (Entrez)NM_005088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKAP17A
Alternative Splicing GalleryENSG00000197976
Gene ExpressionAKAP17A [ NCBI-GEO ]   AKAP17A [ EBI - ARRAY_EXPRESS ]   AKAP17A [ SEEK ]   AKAP17A [ MEM ]
Gene Expression Viewer (FireBrowse)AKAP17A [ Firebrowse - Broad ]
GenevisibleExpression of AKAP17A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8227
GTEX Portal (Tissue expression)AKAP17A
Human Protein AtlasENSG00000197976-AKAP17A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02040
Splice isoforms : SwissVarQ02040
PhosPhoSitePlusQ02040
Domains : Interpro (EBI)AKAP17A    RBD_domain_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AKAP17A
Blocks (Seattle)AKAP17A
SuperfamilyQ02040
Human Protein Atlas [tissue]ENSG00000197976-AKAP17A [tissue]
Peptide AtlasQ02040
HPRD02419
IPIIPI00024024   IPI00845316   IPI00643565   
Protein Interaction databases
DIP (DOE-UCLA)Q02040
IntAct (EBI)Q02040
BioGRIDAKAP17A
STRING (EMBL)AKAP17A
ZODIACAKAP17A
Ontologies - Pathways
QuickGOQ02040
Ontology : AmiGORNA binding  protein binding  nucleus  spliceosomal complex  cytosol  regulation of transcription, DNA-templated  mRNA processing  signal transduction  RNA splicing  nuclear speck  B cell activation  regulation of RNA splicing  protein kinase A binding  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  spliceosomal complex  cytosol  regulation of transcription, DNA-templated  mRNA processing  signal transduction  RNA splicing  nuclear speck  B cell activation  regulation of RNA splicing  protein kinase A binding  
NDEx NetworkAKAP17A
Atlas of Cancer Signalling NetworkAKAP17A
Wikipedia pathwaysAKAP17A
Orthology - Evolution
OrthoDB8227
GeneTree (enSembl)ENSG00000197976
Phylogenetic Trees/Animal Genes : TreeFamAKAP17A
HOGENOMQ02040
Homologs : HomoloGeneAKAP17A
Homology/Alignments : Family Browser (UCSC)AKAP17A
Gene fusions - Rearrangements
Fusion : QuiverAKAP17A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKAP17A [hg38]
dbVarAKAP17A
ClinVarAKAP17A
MonarchAKAP17A
1000_GenomesAKAP17A 
Exome Variant ServerAKAP17A
GNOMAD BrowserENSG00000197976
Varsome BrowserAKAP17A
Genomic Variants (DGV)AKAP17A [DGVbeta]
DECIPHERAKAP17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKAP17A 
Mutations
ICGC Data PortalAKAP17A 
TCGA Data PortalAKAP17A 
Broad Tumor PortalAKAP17A
OASIS PortalAKAP17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKAP17A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAKAP17A
Mutations and Diseases : HGMDAKAP17A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AKAP17A
DgiDB (Drug Gene Interaction Database)AKAP17A
DoCM (Curated mutations)AKAP17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKAP17A (select a term)
intoGenAKAP17A
Cancer3DAKAP17A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM312095    465000   
Orphanet
DisGeNETAKAP17A
MedgenAKAP17A
Genetic Testing Registry AKAP17A
NextProtQ02040 [Medical]
GENETestsAKAP17A
Target ValidationAKAP17A
Huge Navigator AKAP17A [HugePedia]
ClinGenAKAP17A
Clinical trials, drugs, therapy
MyCancerGenomeAKAP17A
Protein Interactions : CTD
Pharm GKB GenePA162402969
Clinical trialAKAP17A
Miscellaneous
canSAR (ICR)AKAP17A (select the gene name)
HarmonizomeAKAP17A
DataMed IndexAKAP17A
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKAP17A
EVEXAKAP17A
GoPubMedAKAP17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:45:26 CET 2020

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