Atlas of Genetics and Cytogenetics in Oncology and Haematology

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AKIP1 (A-kinase interacting protein 1)

Identity

Alias_namesC11orf17
chromosome 11 open reading frame 17
A kinase (PRKA) interacting protein 1
Alias_symbol (synonym)BCA3
Other alias
HGNC (Hugo) AKIP1
LocusID (NCBI) 56672
Atlas_Id 52192
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 8911154 and ends at 8920079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		AKIP1 (11p15.4) / EIF5 (14q32.32)AKIP1 (11p15.4) / F2R (5q13.3)CUEDC1 (17q22) / AKIP1 (11p15.4)
FBLIM1 (1p36.21) / AKIP1 (11p15.4)IPO7 (11p15.4) / AKIP1 (11p15.4)PWWP2A (5q33.3) / AKIP1 (11p15.4)
IPO7 11p15.4 / AKIP1 11p15.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AKIP1   1170
Cards
Entrez_Gene (NCBI)AKIP1  56672  A-kinase interacting protein 1
AliasesBCA3; C11orf17
GeneCards (Weizmann)AKIP1
Ensembl hg19 (Hinxton)ENSG00000166452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166452 [Gene_View]  chr11:8911154-8920079 [Contig_View]  AKIP1 [Vega]
ICGC DataPortalENSG00000166452
TCGA cBioPortalAKIP1
AceView (NCBI)AKIP1
Genatlas (Paris)AKIP1
WikiGenes56672
SOURCE (Princeton)AKIP1
Genetics Home Reference (NIH)AKIP1
Genomic and cartography
GoldenPath hg38 (UCSC)AKIP1  -     chr11:8911154-8920079 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKIP1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblAKIP1 - 11p15.4 [CytoView hg19]  AKIP1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIAKIP1 [Mapview hg19]  AKIP1 [Mapview hg38]
OMIM609191   
Gene and transcription
Genbank (Entrez)AF493783 AF493784 AF493785 AF512007 AK075308
RefSeq transcript (Entrez)NM_001206645 NM_001206646 NM_001206647 NM_001206648 NM_020642 NM_182901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKIP1
Cluster EST : UnigeneHs.131180 [ NCBI ]
CGAP (NCI)Hs.131180
Alternative Splicing GalleryENSG00000166452
Gene ExpressionAKIP1 [ NCBI-GEO ]   AKIP1 [ EBI - ARRAY_EXPRESS ]   AKIP1 [ SEEK ]   AKIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)AKIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56672
GTEX Portal (Tissue expression)AKIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ31
Splice isoforms : SwissVarQ9NQ31
PhosPhoSitePlusQ9NQ31
Domains : Interpro (EBI)AKIP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AKIP1
DMDM Disease mutations56672
Blocks (Seattle)AKIP1
SuperfamilyQ9NQ31
Human Protein AtlasENSG00000166452
Peptide AtlasQ9NQ31
HPRD12380
IPIIPI00299443   IPI00152045   IPI00152039   IPI00982127   IPI00910818   IPI00910231   IPI00981688   IPI00980499   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ31
IntAct (EBI)Q9NQ31
FunCoupENSG00000166452
BioGRIDAKIP1
STRING (EMBL)AKIP1
ZODIACAKIP1
Ontologies - Pathways
QuickGOQ9NQ31
Ontology : AmiGOprotein binding  nucleoplasm  substrate adhesion-dependent cell spreading  regulation of NIK/NF-kappaB signaling  
Ontology : EGO-EBIprotein binding  nucleoplasm  substrate adhesion-dependent cell spreading  regulation of NIK/NF-kappaB signaling  
NDEx NetworkAKIP1
Atlas of Cancer Signalling NetworkAKIP1
Wikipedia pathwaysAKIP1
Orthology - Evolution
OrthoDB56672
GeneTree (enSembl)ENSG00000166452
Phylogenetic Trees/Animal Genes : TreeFamAKIP1
HOVERGENQ9NQ31
HOGENOMQ9NQ31
Homologs : HomoloGeneAKIP1
Homology/Alignments : Family Browser (UCSC)AKIP1
Gene fusions - Rearrangements
Fusion : MitelmanIPO7/AKIP1 [11p15.4/11p15.4]  [t(11;11)(p15;p15)]  
Fusion: TCGAIPO7 11p15.4 AKIP1 11p15.4 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKIP1
dbVarAKIP1
ClinVarAKIP1
1000_GenomesAKIP1 
Exome Variant ServerAKIP1
ExAC (Exome Aggregation Consortium)AKIP1 (select the gene name)
Genetic variants : HAPMAP56672
Genomic Variants (DGV)AKIP1 [DGVbeta]
DECIPHERAKIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKIP1 
Mutations
ICGC Data PortalAKIP1 
TCGA Data PortalAKIP1 
Broad Tumor PortalAKIP1
OASIS PortalAKIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AKIP1
DgiDB (Drug Gene Interaction Database)AKIP1
DoCM (Curated mutations)AKIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKIP1 (select a term)
intoGenAKIP1
Cancer3DAKIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609191   
Orphanet
MedgenAKIP1
Genetic Testing Registry AKIP1
NextProtQ9NQ31 [Medical]
TSGene56672
GENETestsAKIP1
Target ValidationAKIP1
Huge Navigator AKIP1 [HugePedia]
snp3D : Map Gene to Disease56672
BioCentury BCIQAKIP1
ClinGenAKIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56672
Chemical/Pharm GKB GenePA25484
Clinical trialAKIP1
Miscellaneous
canSAR (ICR)AKIP1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKIP1
EVEXAKIP1
GoPubMedAKIP1
iHOPAKIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:20 CEST 2017
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