Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AKIRIN1 (akirin 1)

Identity

Alias_namesC1orf108
chromosome 1 open reading frame 108
Alias_symbol (synonym)FLJ12666
Other aliasSTRF2
HGNC (Hugo) AKIRIN1
LocusID (NCBI) 79647
Atlas_Id 60227
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38991244 and ends at 39006065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AD_1 () / AKIRIN1 (1p34.3)AKIRIN1 (1p34.3) / AKIRIN1 (1p34.3)AKIRIN1 (1p34.3) / MEAF6 (1p34.3)
AKIRIN1 (1p34.3) / PPIE (1p34.2)AKIRIN1 (1p34.3) / RAB21 (12q21.1)AKIRIN1 (1p34.3) / SORBS1 (10q24.1)
LIFR (5p13.1) / AKIRIN1 (1p34.3)MACF1 (1p34.3) / AKIRIN1 (1p34.3)OPHN1 (Xq12) / AKIRIN1 (1p34.3)
PSMC3 (11p11.2) / AKIRIN1 (1p34.3)SLC12A2 (5q23.3) / AKIRIN1 (1p34.3)YWHAQ (2p25.1) / AKIRIN1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKIRIN1   25744
Cards
Entrez_Gene (NCBI)AKIRIN1  79647  akirin 1
AliasesC1orf108; STRF2
GeneCards (Weizmann)AKIRIN1
Ensembl hg19 (Hinxton)ENSG00000174574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174574 [Gene_View]  chr1:38991244-39006065 [Contig_View]  AKIRIN1 [Vega]
ICGC DataPortalENSG00000174574
TCGA cBioPortalAKIRIN1
AceView (NCBI)AKIRIN1
Genatlas (Paris)AKIRIN1
WikiGenes79647
SOURCE (Princeton)AKIRIN1
Genetics Home Reference (NIH)AKIRIN1
Genomic and cartography
GoldenPath hg38 (UCSC)AKIRIN1  -     chr1:38991244-39006065 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKIRIN1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblAKIRIN1 - 1p34.3 [CytoView hg19]  AKIRIN1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIAKIRIN1 [Mapview hg19]  AKIRIN1 [Mapview hg38]
OMIM615164   
Gene and transcription
Genbank (Entrez)AK022728 AK092624 AK124799 AK126262 AK223276
RefSeq transcript (Entrez)NM_001136275 NM_024595
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKIRIN1
Cluster EST : UnigeneHs.293563 [ NCBI ]
CGAP (NCI)Hs.293563
Alternative Splicing GalleryENSG00000174574
Gene ExpressionAKIRIN1 [ NCBI-GEO ]   AKIRIN1 [ EBI - ARRAY_EXPRESS ]   AKIRIN1 [ SEEK ]   AKIRIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)AKIRIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79647
GTEX Portal (Tissue expression)AKIRIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9L7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9L7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9L7
Splice isoforms : SwissVarQ9H9L7
PhosPhoSitePlusQ9H9L7
Domains : Interpro (EBI)Akirin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AKIRIN1
DMDM Disease mutations79647
Blocks (Seattle)AKIRIN1
SuperfamilyQ9H9L7
Human Protein AtlasENSG00000174574
Peptide AtlasQ9H9L7
HPRD07787
IPIIPI00844006   IPI00455612   IPI00979560   IPI00909222   IPI00908393   IPI00980127   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9L7
IntAct (EBI)Q9H9L7
FunCoupENSG00000174574
BioGRIDAKIRIN1
STRING (EMBL)AKIRIN1
ZODIACAKIRIN1
Ontologies - Pathways
QuickGOQ9H9L7
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  nuclear membrane  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  nuclear membrane  
NDEx NetworkAKIRIN1
Atlas of Cancer Signalling NetworkAKIRIN1
Wikipedia pathwaysAKIRIN1
Orthology - Evolution
OrthoDB79647
GeneTree (enSembl)ENSG00000174574
Phylogenetic Trees/Animal Genes : TreeFamAKIRIN1
HOVERGENQ9H9L7
HOGENOMQ9H9L7
Homologs : HomoloGeneAKIRIN1
Homology/Alignments : Family Browser (UCSC)AKIRIN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKIRIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKIRIN1
dbVarAKIRIN1
ClinVarAKIRIN1
1000_GenomesAKIRIN1 
Exome Variant ServerAKIRIN1
ExAC (Exome Aggregation Consortium)AKIRIN1 (select the gene name)
Genetic variants : HAPMAP79647
Genomic Variants (DGV)AKIRIN1 [DGVbeta]
DECIPHERAKIRIN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKIRIN1 
Mutations
ICGC Data PortalAKIRIN1 
TCGA Data PortalAKIRIN1 
Broad Tumor PortalAKIRIN1
OASIS PortalAKIRIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKIRIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKIRIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AKIRIN1
DgiDB (Drug Gene Interaction Database)AKIRIN1
DoCM (Curated mutations)AKIRIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKIRIN1 (select a term)
intoGenAKIRIN1
Cancer3DAKIRIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615164   
Orphanet
MedgenAKIRIN1
Genetic Testing Registry AKIRIN1
NextProtQ9H9L7 [Medical]
TSGene79647
GENETestsAKIRIN1
Huge Navigator AKIRIN1 [HugePedia]
snp3D : Map Gene to Disease79647
BioCentury BCIQAKIRIN1
ClinGenAKIRIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79647
Chemical/Pharm GKB GenePA162376180
Clinical trialAKIRIN1
Miscellaneous
canSAR (ICR)AKIRIN1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKIRIN1
EVEXAKIRIN1
GoPubMedAKIRIN1
iHOPAKIRIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 10:59:42 CEST 2017

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