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AKNA (AT-hook transcription factor)

Identity

Alias_symbol (synonym)KIAA1968
Other alias-
HGNC (Hugo) AKNA
LocusID (NCBI) 80709
Atlas_Id 51764
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 114336127 and ends at 114387963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKNA (9q32) / ENO1 (1p36.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKNA   24108
Cards
Entrez_Gene (NCBI)AKNA  80709  AT-hook transcription factor
Aliases
GeneCards (Weizmann)AKNA
Ensembl hg19 (Hinxton)ENSG00000106948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106948 [Gene_View]  chr9:114336127-114387963 [Contig_View]  AKNA [Vega]
ICGC DataPortalENSG00000106948
TCGA cBioPortalAKNA
AceView (NCBI)AKNA
Genatlas (Paris)AKNA
WikiGenes80709
SOURCE (Princeton)AKNA
Genetics Home Reference (NIH)AKNA
Genomic and cartography
GoldenPath hg38 (UCSC)AKNA  -     chr9:114336127-114387963 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKNA  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblAKNA - 9q32 [CytoView hg19]  AKNA - 9q32 [CytoView hg38]
Mapping of homologs : NCBIAKNA [Mapview hg19]  AKNA [Mapview hg38]
OMIM605729   
Gene and transcription
Genbank (Entrez)AB075848 AF286341 AK024431 AK055563 AK074040
RefSeq transcript (Entrez)NM_001317950 NM_001317952 NM_030767
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKNA
Cluster EST : UnigeneHs.494895 [ NCBI ]
CGAP (NCI)Hs.494895
Alternative Splicing GalleryENSG00000106948
Gene ExpressionAKNA [ NCBI-GEO ]   AKNA [ EBI - ARRAY_EXPRESS ]   AKNA [ SEEK ]   AKNA [ MEM ]
Gene Expression Viewer (FireBrowse)AKNA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80709
GTEX Portal (Tissue expression)AKNA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z591   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z591  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z591
Splice isoforms : SwissVarQ7Z591
PhosPhoSitePlusQ7Z591
Domains : Interpro (EBI)TF_AT-hook   
Domain families : Pfam (Sanger)AKNA (PF12443)   
Domain families : Pfam (NCBI)pfam12443   
Conserved Domain (NCBI)AKNA
DMDM Disease mutations80709
Blocks (Seattle)AKNA
SuperfamilyQ7Z591
Human Protein AtlasENSG00000106948
Peptide AtlasQ7Z591
HPRD16148
IPIIPI00377187   IPI00657833   IPI00477282   IPI00847273   IPI00847363   IPI00445384   IPI00847998   IPI00291825   IPI00470688   IPI00792192   IPI00917098   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z591
IntAct (EBI)Q7Z591
FunCoupENSG00000106948
BioGRIDAKNA
STRING (EMBL)AKNA
ZODIACAKNA
Ontologies - Pathways
QuickGOQ7Z591
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  fibrillar center  nucleoplasm  centrosome  cytosol  transcription from RNA polymerase II promoter  membrane  intracellular membrane-bounded organelle  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  fibrillar center  nucleoplasm  centrosome  cytosol  transcription from RNA polymerase II promoter  membrane  intracellular membrane-bounded organelle  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkAKNA
Atlas of Cancer Signalling NetworkAKNA
Wikipedia pathwaysAKNA
Orthology - Evolution
OrthoDB80709
GeneTree (enSembl)ENSG00000106948
Phylogenetic Trees/Animal Genes : TreeFamAKNA
HOVERGENQ7Z591
HOGENOMQ7Z591
Homologs : HomoloGeneAKNA
Homology/Alignments : Family Browser (UCSC)AKNA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKNA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKNA
dbVarAKNA
ClinVarAKNA
1000_GenomesAKNA 
Exome Variant ServerAKNA
ExAC (Exome Aggregation Consortium)AKNA (select the gene name)
Genetic variants : HAPMAP80709
Genomic Variants (DGV)AKNA [DGVbeta]
DECIPHERAKNA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKNA 
Mutations
ICGC Data PortalAKNA 
TCGA Data PortalAKNA 
Broad Tumor PortalAKNA
OASIS PortalAKNA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKNA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKNA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AKNA
DgiDB (Drug Gene Interaction Database)AKNA
DoCM (Curated mutations)AKNA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKNA (select a term)
intoGenAKNA
Cancer3DAKNA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605729   
Orphanet
MedgenAKNA
Genetic Testing Registry AKNA
NextProtQ7Z591 [Medical]
TSGene80709
GENETestsAKNA
Target ValidationAKNA
Huge Navigator AKNA [HugePedia]
snp3D : Map Gene to Disease80709
BioCentury BCIQAKNA
ClinGenAKNA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80709
Chemical/Pharm GKB GenePA134908332
Clinical trialAKNA
Miscellaneous
canSAR (ICR)AKNA (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKNA
EVEXAKNA
GoPubMedAKNA
iHOPAKNA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:56:49 CEST 2017

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