Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AKNAD1 (AKNA domain containing 1)

Identity

Alias_namesC1orf62
chromosome 1 open reading frame 62
Alias_symbol (synonym)MGC26989
Other alias
HGNC (Hugo) AKNAD1
LocusID (NCBI) 254268
Atlas_Id 60229
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108815898 and ends at 108857104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKNAD1 (1p13.3) / ABAT (16p13.2)AKNAD1 (1p13.3) / FAP (2q24.2)AKNAD1 (1p13.3) / FEM1C (5q22.3)
AKNAD1 (1p13.3) / ITGA5 (12q13.13)AKNAD1 (1p13.3) / LANCL1 (2q34)AKNAD1 (1p13.3) / SAMD4A (14q22.2)
DNAJC21 (5p13.2) / AKNAD1 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKNAD1   28398
Cards
Entrez_Gene (NCBI)AKNAD1  254268  AKNA domain containing 1
AliasesC1orf62
GeneCards (Weizmann)AKNAD1
Ensembl hg19 (Hinxton)ENSG00000162641 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162641 [Gene_View]  chr1:108815898-108857104 [Contig_View]  AKNAD1 [Vega]
ICGC DataPortalENSG00000162641
TCGA cBioPortalAKNAD1
AceView (NCBI)AKNAD1
Genatlas (Paris)AKNAD1
WikiGenes254268
SOURCE (Princeton)AKNAD1
Genetics Home Reference (NIH)AKNAD1
Genomic and cartography
GoldenPath hg38 (UCSC)AKNAD1  -     chr1:108815898-108857104 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKNAD1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblAKNAD1 - 1p13.3 [CytoView hg19]  AKNAD1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIAKNAD1 [Mapview hg19]  AKNAD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095517 AK313772 AL832216 BC030647 BC150642
RefSeq transcript (Entrez)NM_152763
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKNAD1
Cluster EST : UnigeneHs.744647 [ NCBI ]
CGAP (NCI)Hs.744647
Alternative Splicing GalleryENSG00000162641
Gene ExpressionAKNAD1 [ NCBI-GEO ]   AKNAD1 [ EBI - ARRAY_EXPRESS ]   AKNAD1 [ SEEK ]   AKNAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)AKNAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254268
GTEX Portal (Tissue expression)AKNAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1N1
Splice isoforms : SwissVarQ5T1N1
PhosPhoSitePlusQ5T1N1
Domains : Interpro (EBI)TF_AT-hook   
Domain families : Pfam (Sanger)AKNA (PF12443)   
Domain families : Pfam (NCBI)pfam12443   
Conserved Domain (NCBI)AKNAD1
DMDM Disease mutations254268
Blocks (Seattle)AKNAD1
SuperfamilyQ5T1N1
Human Protein AtlasENSG00000162641
Peptide AtlasQ5T1N1
HPRD11325
IPIIPI00514779   IPI00978050   IPI00827519   IPI00644677   IPI00908656   IPI00982567   IPI00514386   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1N1
IntAct (EBI)Q5T1N1
FunCoupENSG00000162641
BioGRIDAKNAD1
STRING (EMBL)AKNAD1
ZODIACAKNAD1
Ontologies - Pathways
QuickGOQ5T1N1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkAKNAD1
Atlas of Cancer Signalling NetworkAKNAD1
Wikipedia pathwaysAKNAD1
Orthology - Evolution
OrthoDB254268
GeneTree (enSembl)ENSG00000162641
Phylogenetic Trees/Animal Genes : TreeFamAKNAD1
HOVERGENQ5T1N1
HOGENOMQ5T1N1
Homologs : HomoloGeneAKNAD1
Homology/Alignments : Family Browser (UCSC)AKNAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKNAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKNAD1
dbVarAKNAD1
ClinVarAKNAD1
1000_GenomesAKNAD1 
Exome Variant ServerAKNAD1
ExAC (Exome Aggregation Consortium)AKNAD1 (select the gene name)
Genetic variants : HAPMAP254268
Genomic Variants (DGV)AKNAD1 [DGVbeta]
DECIPHERAKNAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKNAD1 
Mutations
ICGC Data PortalAKNAD1 
TCGA Data PortalAKNAD1 
Broad Tumor PortalAKNAD1
OASIS PortalAKNAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKNAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKNAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch AKNAD1
DgiDB (Drug Gene Interaction Database)AKNAD1
DoCM (Curated mutations)AKNAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKNAD1 (select a term)
intoGenAKNAD1
Cancer3DAKNAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAKNAD1
Genetic Testing Registry AKNAD1
NextProtQ5T1N1 [Medical]
TSGene254268
GENETestsAKNAD1
Target ValidationAKNAD1
Huge Navigator AKNAD1 [HugePedia]
snp3D : Map Gene to Disease254268
BioCentury BCIQAKNAD1
ClinGenAKNAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254268
Chemical/Pharm GKB GenePA165750356
Clinical trialAKNAD1
Miscellaneous
canSAR (ICR)AKNAD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKNAD1
EVEXAKNAD1
GoPubMedAKNAD1
iHOPAKNAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:49 CEST 2017

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