Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AKR1C4 (aldo-keto reductase family 1 member C4)

Identity

Other alias3-alpha-HSD
C11
CDR
CHDR
DD-4
DD4
HAKRA
HGNC (Hugo) AKR1C4
LocusID (NCBI) 1109
Atlas_Id 56854
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5196835 and ends at 5218947 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMTM4 (16q21) / AKR1C4 (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKR1C4   387
Cards
Entrez_Gene (NCBI)AKR1C4  1109  aldo-keto reductase family 1 member C4
Aliases3-alpha-HSD; C11; CDR; CHDR; 
DD-4; DD4; HAKRA
GeneCards (Weizmann)AKR1C4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:5196835-5218947 [Contig_View]  AKR1C4 [Vega]
TCGA cBioPortalAKR1C4
AceView (NCBI)AKR1C4
Genatlas (Paris)AKR1C4
WikiGenes1109
SOURCE (Princeton)AKR1C4
Genetics Home Reference (NIH)AKR1C4
Genomic and cartography
GoldenPath hg38 (UCSC)AKR1C4  -     chr10:5196835-5218947 +  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKR1C4  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblAKR1C4 - 10p15.1 [CytoView hg19]  AKR1C4 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIAKR1C4 [Mapview hg19]  AKR1C4 [Mapview hg38]
OMIM600451   614279   
Gene and transcription
Genbank (Entrez)AB031085 AB045829 AK314988 BC020744 D26125
RefSeq transcript (Entrez)NM_001818
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKR1C4
Cluster EST : UnigeneHs.567245 [ NCBI ]
CGAP (NCI)Hs.567245
Gene ExpressionAKR1C4 [ NCBI-GEO ]   AKR1C4 [ EBI - ARRAY_EXPRESS ]   AKR1C4 [ SEEK ]   AKR1C4 [ MEM ]
Gene Expression Viewer (FireBrowse)AKR1C4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1109
GTEX Portal (Tissue expression)AKR1C4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17516   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17516  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17516
Splice isoforms : SwissVarP17516
Catalytic activity : Enzyme1.1.1.- [ Enzyme-Expasy ]   1.1.1.-1.1.1.- [ IntEnz-EBI ]   1.1.1.- [ BRENDA ]   1.1.1.- [ KEGG ]   
PhosPhoSitePlusP17516
Domaine pattern : Prosite (Expaxy)ALDOKETO_REDUCTASE_1 (PS00798)    ALDOKETO_REDUCTASE_2 (PS00062)    ALDOKETO_REDUCTASE_3 (PS00063)   
Domains : Interpro (EBI)Aldo/ket_reductase_CS    Aldo/keto_reductase    NADP_OxRdtase_dom   
Domain families : Pfam (Sanger)Aldo_ket_red (PF00248)   
Domain families : Pfam (NCBI)pfam00248   
Conserved Domain (NCBI)AKR1C4
DMDM Disease mutations1109
Blocks (Seattle)AKR1C4
PDB (SRS)2FVL   
PDB (PDBSum)2FVL   
PDB (IMB)2FVL   
PDB (RSDB)2FVL   
Structural Biology KnowledgeBase2FVL   
SCOP (Structural Classification of Proteins)2FVL   
CATH (Classification of proteins structures)2FVL   
SuperfamilyP17516
Peptide AtlasP17516
IPIIPI00289524   IPI00871915   
Protein Interaction databases
DIP (DOE-UCLA)P17516
IntAct (EBI)P17516
BioGRIDAKR1C4
STRING (EMBL)AKR1C4
ZODIACAKR1C4
Ontologies - Pathways
QuickGOP17516
Ontology : AmiGOretinoid metabolic process  retinal dehydrogenase activity  aldo-keto reductase (NADP) activity  cytoplasm  cytosol  bile acid biosynthetic process  steroid metabolic process  androgen metabolic process  electron carrier activity  bile acid transmembrane transporter activity  bile acid and bile salt transport  oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor  daunorubicin metabolic process  doxorubicin metabolic process  androsterone dehydrogenase activity  chlordecone reductase activity  oxidation-reduction process  extracellular exosome  cellular response to jasmonic acid stimulus  
Ontology : EGO-EBIretinoid metabolic process  retinal dehydrogenase activity  aldo-keto reductase (NADP) activity  cytoplasm  cytosol  bile acid biosynthetic process  steroid metabolic process  androgen metabolic process  electron carrier activity  bile acid transmembrane transporter activity  bile acid and bile salt transport  oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor  daunorubicin metabolic process  doxorubicin metabolic process  androsterone dehydrogenase activity  chlordecone reductase activity  oxidation-reduction process  extracellular exosome  cellular response to jasmonic acid stimulus  
Pathways : KEGGPrimary bile acid biosynthesis    Steroid hormone biosynthesis    Metabolism of xenobiotics by cytochrome P450   
NDEx NetworkAKR1C4
Atlas of Cancer Signalling NetworkAKR1C4
Wikipedia pathwaysAKR1C4
Orthology - Evolution
OrthoDB1109
Phylogenetic Trees/Animal Genes : TreeFamAKR1C4
HOVERGENP17516
HOGENOMP17516
Homologs : HomoloGeneAKR1C4
Homology/Alignments : Family Browser (UCSC)AKR1C4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKR1C4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKR1C4
dbVarAKR1C4
ClinVarAKR1C4
1000_GenomesAKR1C4 
Exome Variant ServerAKR1C4
ExAC (Exome Aggregation Consortium)AKR1C4 (select the gene name)
Genetic variants : HAPMAP1109
Genomic Variants (DGV)AKR1C4 [DGVbeta]
DECIPHERAKR1C4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKR1C4 
Mutations
ICGC Data PortalAKR1C4 
TCGA Data PortalAKR1C4 
Broad Tumor PortalAKR1C4
OASIS PortalAKR1C4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAKR1C4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAKR1C4
BioMutasearch AKR1C4
DgiDB (Drug Gene Interaction Database)AKR1C4
DoCM (Curated mutations)AKR1C4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKR1C4 (select a term)
intoGenAKR1C4
Cancer3DAKR1C4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600451    614279   
Orphanet
MedgenAKR1C4
Genetic Testing Registry AKR1C4
NextProtP17516 [Medical]
TSGene1109
GENETestsAKR1C4
Target ValidationAKR1C4
Huge Navigator AKR1C4 [HugePedia]
snp3D : Map Gene to Disease1109
BioCentury BCIQAKR1C4
ClinGenAKR1C4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1109
Chemical/Pharm GKB GenePA24680
Clinical trialAKR1C4
Miscellaneous
canSAR (ICR)AKR1C4 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKR1C4
EVEXAKR1C4
GoPubMedAKR1C4
iHOPAKR1C4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:46:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.