Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AKR1C8P (aldo-keto reductase family 1 member C8, pseudogene)

Identity

Alias_namesAKR1CL1
aldo-keto reductase family 1, member C-like 1
Other alias
HGNC (Hugo) AKR1C8P
LocusID (NCBI) 340811
Atlas_Id 60233
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5154460 and ends at 5185187 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SHB (9p13.2) / AKR1C8P (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AKR1C8P   23469
Cards
Entrez_Gene (NCBI)AKR1C8P  340811  aldo-keto reductase family 1 member C8, pseudogene
AliasesAKR1CL1
GeneCards (Weizmann)AKR1C8P
Ensembl hg19 (Hinxton)ENSG00000264006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000264006 [Gene_View]  chr10:5154460-5185187 [Contig_View]  AKR1C8P [Vega]
ICGC DataPortalENSG00000264006
TCGA cBioPortalAKR1C8P
AceView (NCBI)AKR1C8P
Genatlas (Paris)AKR1C8P
WikiGenes340811
SOURCE (Princeton)AKR1C8P
Genetics Home Reference (NIH)AKR1C8P
Genomic and cartography
GoldenPath hg38 (UCSC)AKR1C8P  -     chr10:5154460-5185187 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AKR1C8P  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblAKR1C8P - 10p15.1 [CytoView hg19]  AKR1C8P - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIAKR1C8P [Mapview hg19]  AKR1C8P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131335 BC101204 BC101205
RefSeq transcript (Entrez)NM_001007536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AKR1C8P
Cluster EST : UnigeneHs.282513 [ NCBI ]
CGAP (NCI)Hs.282513
Alternative Splicing GalleryENSG00000264006
Gene ExpressionAKR1C8P [ NCBI-GEO ]   AKR1C8P [ EBI - ARRAY_EXPRESS ]   AKR1C8P [ SEEK ]   AKR1C8P [ MEM ]
Gene Expression Viewer (FireBrowse)AKR1C8P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340811
GTEX Portal (Tissue expression)AKR1C8P
Human Protein AtlasENSG00000264006-AKR1C8P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2L2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2L2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2L2
Splice isoforms : SwissVarQ5T2L2
PhosPhoSitePlusQ5T2L2
Domaine pattern : Prosite (Expaxy)ALDOKETO_REDUCTASE_1 (PS00798)   
Domains : Interpro (EBI)Aldo/ket_reductase_CS    Aldo/keto_reductase    NADP_OxRdtase_dom   
Domain families : Pfam (Sanger)Aldo_ket_red (PF00248)   
Domain families : Pfam (NCBI)pfam00248   
Conserved Domain (NCBI)AKR1C8P
DMDM Disease mutations340811
Blocks (Seattle)AKR1C8P
SuperfamilyQ5T2L2
Human Protein Atlas [tissue]ENSG00000264006-AKR1C8P [tissue]
Peptide AtlasQ5T2L2
HPRD16480
IPIIPI00942683   IPI00745863   IPI00947007   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2L2
IntAct (EBI)Q5T2L2
FunCoupENSG00000264006
BioGRIDAKR1C8P
STRING (EMBL)AKR1C8P
ZODIACAKR1C8P
Ontologies - Pathways
QuickGOQ5T2L2
Ontology : AmiGOcytoplasm  oxidoreductase activity  oxidation-reduction process  
Ontology : EGO-EBIcytoplasm  oxidoreductase activity  oxidation-reduction process  
NDEx NetworkAKR1C8P
Atlas of Cancer Signalling NetworkAKR1C8P
Wikipedia pathwaysAKR1C8P
Orthology - Evolution
OrthoDB340811
GeneTree (enSembl)ENSG00000264006
Phylogenetic Trees/Animal Genes : TreeFamAKR1C8P
HOVERGENQ5T2L2
HOGENOMQ5T2L2
Homologs : HomoloGeneAKR1C8P
Homology/Alignments : Family Browser (UCSC)AKR1C8P
Gene fusions - Rearrangements
Fusion: Tumor Portal AKR1C8P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAKR1C8P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AKR1C8P
dbVarAKR1C8P
ClinVarAKR1C8P
1000_GenomesAKR1C8P 
Exome Variant ServerAKR1C8P
ExAC (Exome Aggregation Consortium)ENSG00000264006
GNOMAD BrowserENSG00000264006
Genetic variants : HAPMAP340811
Genomic Variants (DGV)AKR1C8P [DGVbeta]
DECIPHERAKR1C8P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAKR1C8P 
Mutations
ICGC Data PortalAKR1C8P 
TCGA Data PortalAKR1C8P 
Broad Tumor PortalAKR1C8P
OASIS PortalAKR1C8P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAKR1C8P
BioMutasearch AKR1C8P
DgiDB (Drug Gene Interaction Database)AKR1C8P
DoCM (Curated mutations)AKR1C8P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AKR1C8P (select a term)
intoGenAKR1C8P
Cancer3DAKR1C8P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAKR1C8P
Genetic Testing Registry AKR1C8P
NextProtQ5T2L2 [Medical]
TSGene340811
GENETestsAKR1C8P
Target ValidationAKR1C8P
Huge Navigator AKR1C8P [HugePedia]
snp3D : Map Gene to Disease340811
BioCentury BCIQAKR1C8P
ClinGenAKR1C8P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340811
Chemical/Pharm GKB GenePA134869740
Clinical trialAKR1C8P
Miscellaneous
canSAR (ICR)AKR1C8P (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAKR1C8P
EVEXAKR1C8P
GoPubMedAKR1C8P
iHOPAKR1C8P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:37:24 CET 2017

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