Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ALDH16A1 (aldehyde dehydrogenase 16 family member A1)

Identity

Alias_namesaldehyde dehydrogenase 16 family, member A1
Alias_symbol (synonym)MGC10204
Other alias-
HGNC (Hugo) ALDH16A1
LocusID (NCBI) 126133
Atlas_Id 60237
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49453216 and ends at 49471048 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FLT3LG (19q13.33) / ALDH16A1 (19q13.33)PIH1D1 (19q13.33) / ALDH16A1 (19q13.33)RPS11 (19q13.33) / ALDH16A1 (19q13.33)
TAF2 (8q24.12) / ALDH16A1 (19q13.33)TAF2 ALDH16A1PIH1D1 ALDH16A1
FLT3LG ALDH16A1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALDH16A1   28114
Cards
Entrez_Gene (NCBI)ALDH16A1  126133  aldehyde dehydrogenase 16 family member A1
Aliases
GeneCards (Weizmann)ALDH16A1
Ensembl hg19 (Hinxton)ENSG00000161618 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161618 [Gene_View]  chr19:49453216-49471048 [Contig_View]  ALDH16A1 [Vega]
ICGC DataPortalENSG00000161618
TCGA cBioPortalALDH16A1
AceView (NCBI)ALDH16A1
Genatlas (Paris)ALDH16A1
WikiGenes126133
SOURCE (Princeton)ALDH16A1
Genetics Home Reference (NIH)ALDH16A1
Genomic and cartography
GoldenPath hg38 (UCSC)ALDH16A1  -     chr19:49453216-49471048 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALDH16A1  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblALDH16A1 - 19q13.33 [CytoView hg19]  ALDH16A1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIALDH16A1 [Mapview hg19]  ALDH16A1 [Mapview hg38]
OMIM613358   
Gene and transcription
Genbank (Entrez)AK024182 AK074136 AK297101 AK298587 AK301246
RefSeq transcript (Entrez)NM_001145396 NM_153329
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALDH16A1
Cluster EST : UnigeneHs.719998 [ NCBI ]
CGAP (NCI)Hs.719998
Alternative Splicing GalleryENSG00000161618
Gene ExpressionALDH16A1 [ NCBI-GEO ]   ALDH16A1 [ EBI - ARRAY_EXPRESS ]   ALDH16A1 [ SEEK ]   ALDH16A1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALDH16A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126133
GTEX Portal (Tissue expression)ALDH16A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ83
Splice isoforms : SwissVarQ8IZ83
PhosPhoSitePlusQ8IZ83
Domains : Interpro (EBI)Ald_DH/histidinol_DH    Ald_DH_C    Ald_DH_N    Aldehyde_DH    Aldehyde_DH_dom   
Domain families : Pfam (Sanger)Aldedh (PF00171)   
Domain families : Pfam (NCBI)pfam00171   
Conserved Domain (NCBI)ALDH16A1
DMDM Disease mutations126133
Blocks (Seattle)ALDH16A1
SuperfamilyQ8IZ83
Human Protein AtlasENSG00000161618
Peptide AtlasQ8IZ83
HPRD14394
IPIIPI00217920   IPI00646424   IPI01009162   IPI01016080   IPI00910572   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ83
IntAct (EBI)Q8IZ83
FunCoupENSG00000161618
BioGRIDALDH16A1
STRING (EMBL)ALDH16A1
ZODIACALDH16A1
Ontologies - Pathways
QuickGOQ8IZ83
Ontology : AmiGOaldehyde dehydrogenase (NAD) activity  membrane  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIaldehyde dehydrogenase (NAD) activity  membrane  oxidation-reduction process  extracellular exosome  
NDEx NetworkALDH16A1
Atlas of Cancer Signalling NetworkALDH16A1
Wikipedia pathwaysALDH16A1
Orthology - Evolution
OrthoDB126133
GeneTree (enSembl)ENSG00000161618
Phylogenetic Trees/Animal Genes : TreeFamALDH16A1
HOVERGENQ8IZ83
HOGENOMQ8IZ83
Homologs : HomoloGeneALDH16A1
Homology/Alignments : Family Browser (UCSC)ALDH16A1
Gene fusions - Rearrangements
Fusion: TCGATAF2 ALDH16A1
Fusion: TCGAPIH1D1 ALDH16A1
Fusion: TCGAFLT3LG ALDH16A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALDH16A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALDH16A1
dbVarALDH16A1
ClinVarALDH16A1
1000_GenomesALDH16A1 
Exome Variant ServerALDH16A1
ExAC (Exome Aggregation Consortium)ALDH16A1 (select the gene name)
Genetic variants : HAPMAP126133
Genomic Variants (DGV)ALDH16A1 [DGVbeta]
DECIPHERALDH16A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALDH16A1 
Mutations
ICGC Data PortalALDH16A1 
TCGA Data PortalALDH16A1 
Broad Tumor PortalALDH16A1
OASIS PortalALDH16A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALDH16A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALDH16A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALDH16A1
DgiDB (Drug Gene Interaction Database)ALDH16A1
DoCM (Curated mutations)ALDH16A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALDH16A1 (select a term)
intoGenALDH16A1
Cancer3DALDH16A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613358   
Orphanet
MedgenALDH16A1
Genetic Testing Registry ALDH16A1
NextProtQ8IZ83 [Medical]
TSGene126133
GENETestsALDH16A1
Target ValidationALDH16A1
Huge Navigator ALDH16A1 [HugePedia]
snp3D : Map Gene to Disease126133
BioCentury BCIQALDH16A1
ClinGenALDH16A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126133
Chemical/Pharm GKB GenePA134903503
Clinical trialALDH16A1
Miscellaneous
canSAR (ICR)ALDH16A1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALDH16A1
EVEXALDH16A1
GoPubMedALDH16A1
iHOPALDH16A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:01:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.