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ALDH9A1 (aldehyde dehydrogenase 9 family member A1)

Identity

Alias_namesALDH7
ALDH4
ALDH9
aldehyde dehydrogenase 9 family
Alias_symbol (synonym)E3
Other aliasTMABADH
HGNC (Hugo) ALDH9A1
LocusID (NCBI) 223
Atlas_Id 47245
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 165662212 and ends at 165698663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALDH9A1 (1q24.1) / NME7 (1q24.2)ALDH9A1 (1q24.1) / PSAP (10q22.1)LOC100507412 (-) / ALDH9A1 (1q24.1)
ALDH9A1 1q24.1 / NME7 1q24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALDH9A1   412
Cards
Entrez_Gene (NCBI)ALDH9A1  223  aldehyde dehydrogenase 9 family member A1
AliasesALDH4; ALDH7; ALDH9; E3; 
TMABADH
GeneCards (Weizmann)ALDH9A1
Ensembl hg19 (Hinxton)ENSG00000143149 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143149 [Gene_View]  chr1:165662212-165698663 [Contig_View]  ALDH9A1 [Vega]
ICGC DataPortalENSG00000143149
TCGA cBioPortalALDH9A1
AceView (NCBI)ALDH9A1
Genatlas (Paris)ALDH9A1
WikiGenes223
SOURCE (Princeton)ALDH9A1
Genetics Home Reference (NIH)ALDH9A1
Genomic and cartography
GoldenPath hg38 (UCSC)ALDH9A1  -     chr1:165662212-165698663 -  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALDH9A1  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblALDH9A1 - 1q24.1 [CytoView hg19]  ALDH9A1 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBIALDH9A1 [Mapview hg19]  ALDH9A1 [Mapview hg38]
OMIM602733   
Gene and transcription
Genbank (Entrez)AF172093 AK293520 AK301767 AK302183 AK302191
RefSeq transcript (Entrez)NM_000696
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALDH9A1
Cluster EST : UnigeneHs.2533 [ NCBI ]
CGAP (NCI)Hs.2533
Alternative Splicing GalleryENSG00000143149
Gene ExpressionALDH9A1 [ NCBI-GEO ]   ALDH9A1 [ EBI - ARRAY_EXPRESS ]   ALDH9A1 [ SEEK ]   ALDH9A1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALDH9A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)223
GTEX Portal (Tissue expression)ALDH9A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49189   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49189  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49189
Splice isoforms : SwissVarP49189
Catalytic activity : Enzyme1.2.1.47 [ Enzyme-Expasy ]   1.2.1.471.2.1.47 [ IntEnz-EBI ]   1.2.1.47 [ BRENDA ]   1.2.1.47 [ KEGG ]   
PhosPhoSitePlusP49189
Domaine pattern : Prosite (Expaxy)ALDEHYDE_DEHYDR_CYS (PS00070)    ALDEHYDE_DEHYDR_GLU (PS00687)   
Domains : Interpro (EBI)Ald_DH/histidinol_DH    Ald_DH_C    Ald_DH_CS_CYS    Ald_DH_CS_GLU    Ald_DH_N    Aldehyde_DH_dom   
Domain families : Pfam (Sanger)Aldedh (PF00171)   
Domain families : Pfam (NCBI)pfam00171   
Conserved Domain (NCBI)ALDH9A1
DMDM Disease mutations223
Blocks (Seattle)ALDH9A1
SuperfamilyP49189
Human Protein AtlasENSG00000143149
Peptide AtlasP49189
HPRD04109
IPIIPI00982620   IPI00479877   
Protein Interaction databases
DIP (DOE-UCLA)P49189
IntAct (EBI)P49189
FunCoupENSG00000143149
BioGRIDALDH9A1
STRING (EMBL)ALDH9A1
ZODIACALDH9A1
Ontologies - Pathways
QuickGOP49189
Ontology : AmiGO3-chloroallyl aldehyde dehydrogenase activity  aldehyde dehydrogenase (NAD) activity  cytoplasm  cytosol  cellular aldehyde metabolic process  aminobutyraldehyde dehydrogenase activity  1-pyrroline dehydrogenase activity  neurotransmitter biosynthetic process  hormone metabolic process  carnitine biosynthetic process  carnitine biosynthetic process  4-trimethylammoniobutyraldehyde dehydrogenase activity  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBI3-chloroallyl aldehyde dehydrogenase activity  aldehyde dehydrogenase (NAD) activity  cytoplasm  cytosol  cellular aldehyde metabolic process  aminobutyraldehyde dehydrogenase activity  1-pyrroline dehydrogenase activity  neurotransmitter biosynthetic process  hormone metabolic process  carnitine biosynthetic process  carnitine biosynthetic process  4-trimethylammoniobutyraldehyde dehydrogenase activity  oxidation-reduction process  extracellular exosome  
Pathways : KEGG   
NDEx NetworkALDH9A1
Atlas of Cancer Signalling NetworkALDH9A1
Wikipedia pathwaysALDH9A1
Orthology - Evolution
OrthoDB223
GeneTree (enSembl)ENSG00000143149
Phylogenetic Trees/Animal Genes : TreeFamALDH9A1
HOVERGENP49189
HOGENOMP49189
Homologs : HomoloGeneALDH9A1
Homology/Alignments : Family Browser (UCSC)ALDH9A1
Gene fusions - Rearrangements
Fusion : MitelmanALDH9A1/NME7 [1q24.1/1q24.2]  
Fusion: TCGAALDH9A1 1q24.1 NME7 1q24.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALDH9A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALDH9A1
dbVarALDH9A1
ClinVarALDH9A1
1000_GenomesALDH9A1 
Exome Variant ServerALDH9A1
ExAC (Exome Aggregation Consortium)ALDH9A1 (select the gene name)
Genetic variants : HAPMAP223
Genomic Variants (DGV)ALDH9A1 [DGVbeta]
DECIPHERALDH9A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALDH9A1 
Mutations
ICGC Data PortalALDH9A1 
TCGA Data PortalALDH9A1 
Broad Tumor PortalALDH9A1
OASIS PortalALDH9A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALDH9A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALDH9A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ALDH9A1
DgiDB (Drug Gene Interaction Database)ALDH9A1
DoCM (Curated mutations)ALDH9A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALDH9A1 (select a term)
intoGenALDH9A1
Cancer3DALDH9A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602733   
Orphanet
MedgenALDH9A1
Genetic Testing Registry ALDH9A1
NextProtP49189 [Medical]
TSGene223
GENETestsALDH9A1
Target ValidationALDH9A1
Huge Navigator ALDH9A1 [HugePedia]
snp3D : Map Gene to Disease223
BioCentury BCIQALDH9A1
ClinGenALDH9A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD223
Chemical/Pharm GKB GenePA24706
Clinical trialALDH9A1
Miscellaneous
canSAR (ICR)ALDH9A1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALDH9A1
EVEXALDH9A1
GoPubMedALDH9A1
iHOPALDH9A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:23:26 CEST 2017

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