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ALDOC (aldolase, fructose-bisphosphate C)

Identity

Alias_namesaldolase C
Other aliasALDC
HGNC (Hugo) ALDOC
LocusID (NCBI) 230
Atlas_Id 47441
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28573115 and ends at 28576933 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALDOC (17q11.2) / KIF3A (5q31.1)ALDOC (17q11.2) / MAN1A2 (1p12)GAD1 (2q31.1) / ALDOC (17q11.2)
MAN1A2 (1p12) / ALDOC (17q11.2)MARK2 (11q13.1) / ALDOC (17q11.2)SYN1 (Xp11.23) / ALDOC (17q11.2)
TRAK1 (3p22.1) / ALDOC (17q11.2)WNK1 (12p13.33) / ALDOC (17q11.2)ALDOC 17q11.2 / KIF3A 5q31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ALDOC   418
Cards
Entrez_Gene (NCBI)ALDOC  230  aldolase, fructose-bisphosphate C
AliasesALDC
GeneCards (Weizmann)ALDOC
Ensembl hg19 (Hinxton)ENSG00000109107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109107 [Gene_View]  chr17:28573115-28576933 [Contig_View]  ALDOC [Vega]
ICGC DataPortalENSG00000109107
TCGA cBioPortalALDOC
AceView (NCBI)ALDOC
Genatlas (Paris)ALDOC
WikiGenes230
SOURCE (Princeton)ALDOC
Genetics Home Reference (NIH)ALDOC
Genomic and cartography
GoldenPath hg38 (UCSC)ALDOC  -     chr17:28573115-28576933 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALDOC  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblALDOC - 17q11.2 [CytoView hg19]  ALDOC - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIALDOC [Mapview hg19]  ALDOC [Mapview hg38]
OMIM103870   
Gene and transcription
Genbank (Entrez)AF054987 AK293453 AK293623 AK293693 AK294091
RefSeq transcript (Entrez)NM_005165
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALDOC
Cluster EST : UnigeneHs.155247 [ NCBI ]
CGAP (NCI)Hs.155247
Alternative Splicing GalleryENSG00000109107
Gene ExpressionALDOC [ NCBI-GEO ]   ALDOC [ EBI - ARRAY_EXPRESS ]   ALDOC [ SEEK ]   ALDOC [ MEM ]
Gene Expression Viewer (FireBrowse)ALDOC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)230
GTEX Portal (Tissue expression)ALDOC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09972   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09972  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09972
Splice isoforms : SwissVarP09972
Catalytic activity : Enzyme4.1.2.13 [ Enzyme-Expasy ]   4.1.2.134.1.2.13 [ IntEnz-EBI ]   4.1.2.13 [ BRENDA ]   4.1.2.13 [ KEGG ]   
PhosPhoSitePlusP09972
Domaine pattern : Prosite (Expaxy)ALDOLASE_CLASS_I (PS00158)   
Domains : Interpro (EBI)Aldolase_I_AS    Aldolase_TIM    FBA_I   
Domain families : Pfam (Sanger)Glycolytic (PF00274)   
Domain families : Pfam (NCBI)pfam00274   
Conserved Domain (NCBI)ALDOC
DMDM Disease mutations230
Blocks (Seattle)ALDOC
PDB (SRS)1XFB   
PDB (PDBSum)1XFB   
PDB (IMB)1XFB   
PDB (RSDB)1XFB   
Structural Biology KnowledgeBase1XFB   
SCOP (Structural Classification of Proteins)1XFB   
CATH (Classification of proteins structures)1XFB   
SuperfamilyP09972
Human Protein AtlasENSG00000109107
Peptide AtlasP09972
HPRD02386
IPIIPI00922081   IPI00418262   IPI00792375   IPI00789171   
Protein Interaction databases
DIP (DOE-UCLA)P09972
IntAct (EBI)P09972
FunCoupENSG00000109107
BioGRIDALDOC
STRING (EMBL)ALDOC
ZODIACALDOC
Ontologies - Pathways
QuickGOP09972
Ontology : AmiGOfructose-bisphosphate aldolase activity  fructose-bisphosphate aldolase activity  protein binding  extracellular region  mitochondrion  cytosol  cytoskeleton  fructose metabolic process  gluconeogenesis  cytoskeletal protein binding  fructose 1,6-bisphosphate metabolic process  epithelial cell differentiation  secretory granule lumen  neutrophil degranulation  canonical glycolysis  extracellular exosome  tertiary granule lumen  ficolin-1-rich granule lumen  
Ontology : EGO-EBIfructose-bisphosphate aldolase activity  fructose-bisphosphate aldolase activity  protein binding  extracellular region  mitochondrion  cytosol  cytoskeleton  fructose metabolic process  gluconeogenesis  cytoskeletal protein binding  fructose 1,6-bisphosphate metabolic process  epithelial cell differentiation  secretory granule lumen  neutrophil degranulation  canonical glycolysis  extracellular exosome  tertiary granule lumen  ficolin-1-rich granule lumen  
Pathways : KEGGGlycolysis / Gluconeogenesis    Pentose phosphate pathway    Fructose and mannose metabolism   
NDEx NetworkALDOC
Atlas of Cancer Signalling NetworkALDOC
Wikipedia pathwaysALDOC
Orthology - Evolution
OrthoDB230
GeneTree (enSembl)ENSG00000109107
Phylogenetic Trees/Animal Genes : TreeFamALDOC
HOVERGENP09972
HOGENOMP09972
Homologs : HomoloGeneALDOC
Homology/Alignments : Family Browser (UCSC)ALDOC
Gene fusions - Rearrangements
Fusion : MitelmanALDOC/KIF3A [17q11.2/5q31.1]  
Fusion : MitelmanALDOC/MAN1A2 [17q11.2/1p12]  [t(1;17)(p12;q11)]  
Fusion : MitelmanMAN1A2/ALDOC [1p12/17q11.2]  [t(1;17)(p12;q11)]  
Fusion: TCGAALDOC 17q11.2 KIF3A 5q31.1 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALDOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALDOC
dbVarALDOC
ClinVarALDOC
1000_GenomesALDOC 
Exome Variant ServerALDOC
ExAC (Exome Aggregation Consortium)ALDOC (select the gene name)
Genetic variants : HAPMAP230
Genomic Variants (DGV)ALDOC [DGVbeta]
DECIPHERALDOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALDOC 
Mutations
ICGC Data PortalALDOC 
TCGA Data PortalALDOC 
Broad Tumor PortalALDOC
OASIS PortalALDOC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALDOC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALDOC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALDOC
DgiDB (Drug Gene Interaction Database)ALDOC
DoCM (Curated mutations)ALDOC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALDOC (select a term)
intoGenALDOC
Cancer3DALDOC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103870   
Orphanet
MedgenALDOC
Genetic Testing Registry ALDOC
NextProtP09972 [Medical]
TSGene230
GENETestsALDOC
Target ValidationALDOC
Huge Navigator ALDOC [HugePedia]
snp3D : Map Gene to Disease230
BioCentury BCIQALDOC
ClinGenALDOC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD230
Chemical/Pharm GKB GenePA24711
Clinical trialALDOC
Miscellaneous
canSAR (ICR)ALDOC (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALDOC
EVEXALDOC
GoPubMedALDOC
iHOPALDOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:54:48 CEST 2017

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