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ALG1 (ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase)

Identity

Alias_namesasparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)
asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)
Alias_symbol (synonym)HMT-1
HMAT1
Other aliasCDG1K
HMT1
MT-1
Mat-1
hMat-1
HGNC (Hugo) ALG1
LocusID (NCBI) 56052
Atlas_Id 60246
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 5072248 and ends at 5087379 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALG1 (16p13.3) / SEC14L5 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG1   18294
Cards
Entrez_Gene (NCBI)ALG1  56052  ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase
AliasesCDG1K; HMAT1; HMT-1; HMT1; 
MT-1; Mat-1; hMat-1
GeneCards (Weizmann)ALG1
Ensembl hg19 (Hinxton)ENSG00000033011 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000033011 [Gene_View]  chr16:5072248-5087379 [Contig_View]  ALG1 [Vega]
ICGC DataPortalENSG00000033011
TCGA cBioPortalALG1
AceView (NCBI)ALG1
Genatlas (Paris)ALG1
WikiGenes56052
SOURCE (Princeton)ALG1
Genetics Home Reference (NIH)ALG1
Genomic and cartography
GoldenPath hg38 (UCSC)ALG1  -     chr16:5072248-5087379 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALG1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblALG1 - 16p13.3 [CytoView hg19]  ALG1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIALG1 [Mapview hg19]  ALG1 [Mapview hg38]
OMIM605907   608540   
Gene and transcription
Genbank (Entrez)AA810665 AB019038 AK075373 AK298144 AK311475
RefSeq transcript (Entrez)NM_001330504 NM_019109
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALG1
Cluster EST : UnigeneHs.592086 [ NCBI ]
CGAP (NCI)Hs.592086
Alternative Splicing GalleryENSG00000033011
Gene ExpressionALG1 [ NCBI-GEO ]   ALG1 [ EBI - ARRAY_EXPRESS ]   ALG1 [ SEEK ]   ALG1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56052
GTEX Portal (Tissue expression)ALG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT22
Splice isoforms : SwissVarQ9BT22
Catalytic activity : Enzyme2.4.1.142 [ Enzyme-Expasy ]   2.4.1.1422.4.1.142 [ IntEnz-EBI ]   2.4.1.142 [ BRENDA ]   2.4.1.142 [ KEGG ]   
PhosPhoSitePlusQ9BT22
Domains : Interpro (EBI)ALG1-like    Glyco_trans_1   
Domain families : Pfam (Sanger)Glycos_transf_1 (PF00534)   
Domain families : Pfam (NCBI)pfam00534   
Conserved Domain (NCBI)ALG1
DMDM Disease mutations56052
Blocks (Seattle)ALG1
SuperfamilyQ9BT22
Human Protein AtlasENSG00000033011
Peptide AtlasQ9BT22
HPRD10437
IPIIPI00549761   IPI00644402   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT22
IntAct (EBI)Q9BT22
FunCoupENSG00000033011
BioGRIDALG1
STRING (EMBL)ALG1
ZODIACALG1
Ontologies - Pathways
QuickGOQ9BT22
Ontology : AmiGOmannosyltransferase activity  chitobiosyldiphosphodolichol beta-mannosyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  protein glycosylation  protein glycosylation  dolichol-linked oligosaccharide biosynthetic process  membrane  integral component of membrane  mannosylation  
Ontology : EGO-EBImannosyltransferase activity  chitobiosyldiphosphodolichol beta-mannosyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  protein glycosylation  protein glycosylation  dolichol-linked oligosaccharide biosynthetic process  membrane  integral component of membrane  mannosylation  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkALG1
Atlas of Cancer Signalling NetworkALG1
Wikipedia pathwaysALG1
Orthology - Evolution
OrthoDB56052
GeneTree (enSembl)ENSG00000033011
Phylogenetic Trees/Animal Genes : TreeFamALG1
HOVERGENQ9BT22
HOGENOMQ9BT22
Homologs : HomoloGeneALG1
Homology/Alignments : Family Browser (UCSC)ALG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG1
dbVarALG1
ClinVarALG1
1000_GenomesALG1 
Exome Variant ServerALG1
ExAC (Exome Aggregation Consortium)ALG1 (select the gene name)
Genetic variants : HAPMAP56052
Genomic Variants (DGV)ALG1 [DGVbeta]
DECIPHERALG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALG1 
Mutations
ICGC Data PortalALG1 
TCGA Data PortalALG1 
Broad Tumor PortalALG1
OASIS PortalALG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ALG1
DgiDB (Drug Gene Interaction Database)ALG1
DoCM (Curated mutations)ALG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG1 (select a term)
intoGenALG1
Cancer3DALG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605907    608540   
Orphanet11353   
MedgenALG1
Genetic Testing Registry ALG1
NextProtQ9BT22 [Medical]
TSGene56052
GENETestsALG1
Target ValidationALG1
Huge Navigator ALG1 [HugePedia]
snp3D : Map Gene to Disease56052
BioCentury BCIQALG1
ClinGenALG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56052
Chemical/Pharm GKB GenePA134979319
Clinical trialALG1
Miscellaneous
canSAR (ICR)ALG1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG1
EVEXALG1
GoPubMedALG1
iHOPALG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:53 CEST 2017

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