Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ALG11 (ALG11, alpha-1,2-mannosyltransferase)

Identity

Alias_namesasparagine-linked glycosylation 11 homolog (S. cerevisiae, alpha-1,2-mannosyltransferase)
asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)
Alias_symbol (synonym)KIAA0266
Other aliasCDG1P
GT8
HGNC (Hugo) ALG11
LocusID (NCBI) 440138
Atlas_Id 60248
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 52012387 and ends at 52029644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALG11 (13q14.3) / SEMA3A (7q21.11)SSH2 (17q11.2) / ALG11 (13q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG11   32456
Cards
Entrez_Gene (NCBI)ALG11  440138  ALG11, alpha-1,2-mannosyltransferase
AliasesCDG1P; GT8
GeneCards (Weizmann)ALG11
Ensembl hg19 (Hinxton)ENSG00000253710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253710 [Gene_View]  chr13:52012387-52029644 [Contig_View]  ALG11 [Vega]
ICGC DataPortalENSG00000253710
TCGA cBioPortalALG11
AceView (NCBI)ALG11
Genatlas (Paris)ALG11
WikiGenes440138
SOURCE (Princeton)ALG11
Genetics Home Reference (NIH)ALG11
Genomic and cartography
GoldenPath hg38 (UCSC)ALG11  -     chr13:52012387-52029644 +  13q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALG11  -     13q14.3   [Description]    (hg19-Feb_2009)
EnsemblALG11 - 13q14.3 [CytoView hg19]  ALG11 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIALG11 [Mapview hg19]  ALG11 [Mapview hg38]
OMIM613661   613666   
Gene and transcription
Genbank (Entrez)AK025456 AK128503 AK296747 BC010857 BC073862
RefSeq transcript (Entrez)NM_001004127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALG11
Cluster EST : UnigeneHs.732220 [ NCBI ]
CGAP (NCI)Hs.732220
Alternative Splicing GalleryENSG00000253710
Gene ExpressionALG11 [ NCBI-GEO ]   ALG11 [ EBI - ARRAY_EXPRESS ]   ALG11 [ SEEK ]   ALG11 [ MEM ]
Gene Expression Viewer (FireBrowse)ALG11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440138
GTEX Portal (Tissue expression)ALG11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2TAA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2TAA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2TAA5
Splice isoforms : SwissVarQ2TAA5
Catalytic activity : Enzyme2.4.1.131 [ Enzyme-Expasy ]   2.4.1.1312.4.1.131 [ IntEnz-EBI ]   2.4.1.131 [ BRENDA ]   2.4.1.131 [ KEGG ]   
PhosPhoSitePlusQ2TAA5
Domains : Interpro (EBI)ALG11_N    Glyco_trans_1   
Domain families : Pfam (Sanger)ALG11_N (PF15924)    Glycos_transf_1 (PF00534)   
Domain families : Pfam (NCBI)pfam15924    pfam00534   
Conserved Domain (NCBI)ALG11
DMDM Disease mutations440138
Blocks (Seattle)ALG11
SuperfamilyQ2TAA5
Human Protein AtlasENSG00000253710
Peptide AtlasQ2TAA5
HPRD11265
IPIIPI00643365   IPI00973259   IPI00513859   
Protein Interaction databases
DIP (DOE-UCLA)Q2TAA5
IntAct (EBI)Q2TAA5
FunCoupENSG00000253710
BioGRIDALG11
STRING (EMBL)ALG11
ZODIACALG11
Ontologies - Pathways
QuickGOQ2TAA5
Ontology : AmiGOGDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity  endoplasmic reticulum membrane  oligosaccharide-lipid intermediate biosynthetic process  membrane  integral component of membrane  protein glycosylation in endoplasmic reticulum  mannosylation  
Ontology : EGO-EBIGDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity  endoplasmic reticulum membrane  oligosaccharide-lipid intermediate biosynthetic process  membrane  integral component of membrane  protein glycosylation in endoplasmic reticulum  mannosylation  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkALG11
Atlas of Cancer Signalling NetworkALG11
Wikipedia pathwaysALG11
Orthology - Evolution
OrthoDB440138
GeneTree (enSembl)ENSG00000253710
Phylogenetic Trees/Animal Genes : TreeFamALG11
HOVERGENQ2TAA5
HOGENOMQ2TAA5
Homologs : HomoloGeneALG11
Homology/Alignments : Family Browser (UCSC)ALG11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG11
dbVarALG11
ClinVarALG11
1000_GenomesALG11 
Exome Variant ServerALG11
ExAC (Exome Aggregation Consortium)ALG11 (select the gene name)
Genetic variants : HAPMAP440138
Genomic Variants (DGV)ALG11 [DGVbeta]
DECIPHERALG11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALG11 
Mutations
ICGC Data PortalALG11 
TCGA Data PortalALG11 
Broad Tumor PortalALG11
OASIS PortalALG11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALG11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALG11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ALG11
DgiDB (Drug Gene Interaction Database)ALG11
DoCM (Curated mutations)ALG11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG11 (select a term)
intoGenALG11
Cancer3DALG11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613661    613666   
Orphanet20425   
MedgenALG11
Genetic Testing Registry ALG11
NextProtQ2TAA5 [Medical]
TSGene440138
GENETestsALG11
Target ValidationALG11
Huge Navigator ALG11 [HugePedia]
snp3D : Map Gene to Disease440138
BioCentury BCIQALG11
ClinGenALG11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440138
Chemical/Pharm GKB GenePA144596518
Clinical trialALG11
Miscellaneous
canSAR (ICR)ALG11 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG11
EVEXALG11
GoPubMedALG11
iHOPALG11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:01:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.