Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ALG13 (ALG13, UDP-N-acetylglucosaminyltransferase subunit)

Identity

Alias_namesGLT28D1
CXorf45
glycosyltransferase 28 domain containing 1
chromosome X open reading frame 45
asparagine-linked glycosylation 13 homolog (S. cerevisiae)
Alias_symbol (synonym)MDS031
YGL047W
FLJ23018
TDRD13
Other aliasCDG1S
HGNC (Hugo) ALG13
LocusID (NCBI) 79868
Atlas_Id 60250
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110924346 and ends at 110933623 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ALG13 (Xq23) / GSTM2 (1p13.3)SMARCA1 (Xq25) / ALG13 (Xq23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG13   30881
Cards
Entrez_Gene (NCBI)ALG13  79868  ALG13, UDP-N-acetylglucosaminyltransferase subunit
AliasesCDG1S; CXorf45; GLT28D1; MDS031; 
TDRD13; YGL047W
GeneCards (Weizmann)ALG13
Ensembl hg19 (Hinxton)ENSG00000101901 [Gene_View]  chrX:110924346-110933623 [Contig_View]  ALG13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101901 [Gene_View]  chrX:110924346-110933623 [Contig_View]  ALG13 [Vega]
ICGC DataPortalENSG00000101901
TCGA cBioPortalALG13
AceView (NCBI)ALG13
Genatlas (Paris)ALG13
WikiGenes79868
SOURCE (Princeton)ALG13
Genetics Home Reference (NIH)ALG13
Genomic and cartography
GoldenPath hg19 (UCSC)ALG13  -     chrX:110924346-110933623 +  Xq23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALG13  -     Xq23   [Description]    (hg38-Dec_2013)
EnsemblALG13 - Xq23 [CytoView hg19]  ALG13 - Xq23 [CytoView hg38]
Mapping of homologs : NCBIALG13 [Mapview hg19]  ALG13 [Mapview hg38]
OMIM300776   300884   
Gene and transcription
Genbank (Entrez)AF220051 AK026671 AK056347 AK223154 AK300394
RefSeq transcript (Entrez)NM_001039210 NM_001099922 NM_001168385 NM_001257230 NM_001257231 NM_001257234 NM_001257235 NM_001257237 NM_001257239 NM_001257240 NM_001257241 NM_018466
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016238 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ALG13
Cluster EST : UnigeneHs.443061 [ NCBI ]
CGAP (NCI)Hs.443061
Alternative Splicing GalleryENSG00000101901
Gene ExpressionALG13 [ NCBI-GEO ]   ALG13 [ EBI - ARRAY_EXPRESS ]   ALG13 [ SEEK ]   ALG13 [ MEM ]
Gene Expression Viewer (FireBrowse)ALG13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79868
GTEX Portal (Tissue expression)ALG13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP73
Splice isoforms : SwissVarQ9NP73
Catalytic activity : Enzyme2.4.1.141 [ Enzyme-Expasy ]   2.4.1.1412.4.1.141 [ IntEnz-EBI ]   2.4.1.141 [ BRENDA ]   2.4.1.141 [ KEGG ]   
PhosPhoSitePlusQ9NP73
Domaine pattern : Prosite (Expaxy)OTU (PS50802)    TUDOR (PS50304)   
Domains : Interpro (EBI)Glyco_trans_28_C    OTU    Tudor   
Domain families : Pfam (Sanger)Glyco_tran_28_C (PF04101)    OTU (PF02338)   
Domain families : Pfam (NCBI)pfam04101    pfam02338   
Conserved Domain (NCBI)ALG13
DMDM Disease mutations79868
Blocks (Seattle)ALG13
SuperfamilyQ9NP73
Human Protein AtlasENSG00000101901
Peptide AtlasQ9NP73
HPRD06542
IPIIPI00795917   IPI00020512   IPI00963893   IPI00967654   IPI00954874   IPI00954897   IPI00969123   IPI00967395   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP73
IntAct (EBI)Q9NP73
FunCoupENSG00000101901
BioGRIDALG13
STRING (EMBL)ALG13
ZODIACALG13
Ontologies - Pathways
QuickGOQ9NP73
Ontology : AmiGON-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity  protein binding  endoplasmic reticulum membrane  dolichol-linked oligosaccharide biosynthetic process  proteolysis  cysteine-type peptidase activity  protein N-linked glycosylation via asparagine  carbohydrate binding  lipid glycosylation  post-translational protein modification  cellular protein metabolic process  poly(A) RNA binding  
Ontology : EGO-EBIN-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity  protein binding  endoplasmic reticulum membrane  dolichol-linked oligosaccharide biosynthetic process  proteolysis  cysteine-type peptidase activity  protein N-linked glycosylation via asparagine  carbohydrate binding  lipid glycosylation  post-translational protein modification  cellular protein metabolic process  poly(A) RNA binding  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkALG13
Atlas of Cancer Signalling NetworkALG13
Wikipedia pathwaysALG13
Orthology - Evolution
OrthoDB79868
GeneTree (enSembl)ENSG00000101901
Phylogenetic Trees/Animal Genes : TreeFamALG13
HOVERGENQ9NP73
HOGENOMQ9NP73
Homologs : HomoloGeneALG13
Homology/Alignments : Family Browser (UCSC)ALG13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG13
dbVarALG13
ClinVarALG13
1000_GenomesALG13 
Exome Variant ServerALG13
ExAC (Exome Aggregation Consortium)ALG13 (select the gene name)
Genetic variants : HAPMAP79868
Genomic Variants (DGV)ALG13 [DGVbeta]
DECIPHER (Syndromes)X:110924346-110933623  ENSG00000101901
CONAN: Copy Number AnalysisALG13 
Mutations
ICGC Data PortalALG13 
TCGA Data PortalALG13 
Broad Tumor PortalALG13
OASIS PortalALG13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALG13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALG13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ALG13
DgiDB (Drug Gene Interaction Database)ALG13
DoCM (Curated mutations)ALG13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG13 (select a term)
intoGenALG13
Cancer3DALG13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300776    300884   
Orphanet3256    21777   
MedgenALG13
Genetic Testing Registry ALG13
NextProtQ9NP73 [Medical]
TSGene79868
GENETestsALG13
Huge Navigator ALG13 [HugePedia]
snp3D : Map Gene to Disease79868
BioCentury BCIQALG13
ClinGenALG13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79868
Chemical/Pharm GKB GenePA162376235
Clinical trialALG13
Miscellaneous
canSAR (ICR)ALG13 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG13
EVEXALG13
GoPubMedALG13
iHOPALG13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:54:05 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.