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ALG1L (ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like)

Identity

Alias_namesasparagine-linked glycosylation 1-like
Alias_symbol (synonym)ALG1L1
Other alias
HGNC (Hugo) ALG1L
LocusID (NCBI) 200810
Atlas_Id 60251
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125929275 and ends at 125937044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG1L   33721
Cards
Entrez_Gene (NCBI)ALG1L  200810  ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like
AliasesALG1L1
GeneCards (Weizmann)ALG1L
Ensembl hg19 (Hinxton)ENSG00000189366 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189366 [Gene_View]  chr3:125929275-125937044 [Contig_View]  ALG1L [Vega]
ICGC DataPortalENSG00000189366
TCGA cBioPortalALG1L
AceView (NCBI)ALG1L
Genatlas (Paris)ALG1L
WikiGenes200810
SOURCE (Princeton)ALG1L
Genetics Home Reference (NIH)ALG1L
Genomic and cartography
GoldenPath hg38 (UCSC)ALG1L  -     chr3:125929275-125937044 -  3q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALG1L  -     3q21.2   [Description]    (hg19-Feb_2009)
EnsemblALG1L - 3q21.2 [CytoView hg19]  ALG1L - 3q21.2 [CytoView hg38]
Mapping of homologs : NCBIALG1L [Mapview hg19]  ALG1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC073816 BI085096 CD685738 HQ257973
RefSeq transcript (Entrez)NM_001015050 NM_001195223
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALG1L
Cluster EST : UnigeneHs.591299 [ NCBI ]
CGAP (NCI)Hs.591299
Alternative Splicing GalleryENSG00000189366
Gene ExpressionALG1L [ NCBI-GEO ]   ALG1L [ EBI - ARRAY_EXPRESS ]   ALG1L [ SEEK ]   ALG1L [ MEM ]
Gene Expression Viewer (FireBrowse)ALG1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200810
GTEX Portal (Tissue expression)ALG1L
Human Protein AtlasENSG00000189366-ALG1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6GMV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6GMV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6GMV1
Splice isoforms : SwissVarQ6GMV1
PhosPhoSitePlusQ6GMV1
Domains : Interpro (EBI)ALG1-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ALG1L
DMDM Disease mutations200810
Blocks (Seattle)ALG1L
SuperfamilyQ6GMV1
Human Protein Atlas [tissue]ENSG00000189366-ALG1L [tissue]
Peptide AtlasQ6GMV1
HPRD18574
IPIIPI00145612   IPI00981156   
Protein Interaction databases
DIP (DOE-UCLA)Q6GMV1
IntAct (EBI)Q6GMV1
FunCoupENSG00000189366
BioGRIDALG1L
STRING (EMBL)ALG1L
ZODIACALG1L
Ontologies - Pathways
QuickGOQ6GMV1
Ontology : AmiGOmannosyltransferase activity  endoplasmic reticulum  protein glycosylation  mannosylation  
Ontology : EGO-EBImannosyltransferase activity  endoplasmic reticulum  protein glycosylation  mannosylation  
NDEx NetworkALG1L
Atlas of Cancer Signalling NetworkALG1L
Wikipedia pathwaysALG1L
Orthology - Evolution
OrthoDB200810
GeneTree (enSembl)ENSG00000189366
Phylogenetic Trees/Animal Genes : TreeFamALG1L
HOVERGENQ6GMV1
HOGENOMQ6GMV1
Homologs : HomoloGeneALG1L
Homology/Alignments : Family Browser (UCSC)ALG1L
Gene fusions - Rearrangements
Tumor Fusion PortalALG1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG1L
dbVarALG1L
ClinVarALG1L
1000_GenomesALG1L 
Exome Variant ServerALG1L
ExAC (Exome Aggregation Consortium)ENSG00000189366
GNOMAD BrowserENSG00000189366
Genetic variants : HAPMAP200810
Genomic Variants (DGV)ALG1L [DGVbeta]
DECIPHERALG1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALG1L 
Mutations
ICGC Data PortalALG1L 
TCGA Data PortalALG1L 
Broad Tumor PortalALG1L
OASIS PortalALG1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALG1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALG1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALG1L
DgiDB (Drug Gene Interaction Database)ALG1L
DoCM (Curated mutations)ALG1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG1L (select a term)
intoGenALG1L
Cancer3DALG1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETALG1L
MedgenALG1L
Genetic Testing Registry ALG1L
NextProtQ6GMV1 [Medical]
TSGene200810
GENETestsALG1L
Target ValidationALG1L
Huge Navigator ALG1L [HugePedia]
snp3D : Map Gene to Disease200810
BioCentury BCIQALG1L
ClinGenALG1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200810
Chemical/Pharm GKB GenePA165696816
Clinical trialALG1L
Miscellaneous
canSAR (ICR)ALG1L (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG1L
EVEXALG1L
GoPubMedALG1L
iHOPALG1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:56 CET 2017

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