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ALG1L2 (ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like 2)

Identity

Alias_namesasparagine-linked glycosylation 1-like 2
Other alias-
HGNC (Hugo) ALG1L2
LocusID (NCBI) 644974
Atlas_Id 60252
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 130081831 and ends at 130098390 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG1L2   37258
Cards
Entrez_Gene (NCBI)ALG1L2  644974  ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like 2
Aliases
GeneCards (Weizmann)ALG1L2
Ensembl hg19 (Hinxton)ENSG00000251287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251287 [Gene_View]  chr3:130081831-130098390 [Contig_View]  ALG1L2 [Vega]
ICGC DataPortalENSG00000251287
TCGA cBioPortalALG1L2
AceView (NCBI)ALG1L2
Genatlas (Paris)ALG1L2
WikiGenes644974
SOURCE (Princeton)ALG1L2
Genetics Home Reference (NIH)ALG1L2
Genomic and cartography
GoldenPath hg38 (UCSC)ALG1L2  -     chr3:130081831-130098390 +  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALG1L2  -     3q22.1   [Description]    (hg19-Feb_2009)
EnsemblALG1L2 - 3q22.1 [CytoView hg19]  ALG1L2 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIALG1L2 [Mapview hg19]  ALG1L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI833803
RefSeq transcript (Entrez)NM_001136152
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALG1L2
Cluster EST : UnigeneHs.722197 [ NCBI ]
CGAP (NCI)Hs.722197
Alternative Splicing GalleryENSG00000251287
Gene ExpressionALG1L2 [ NCBI-GEO ]   ALG1L2 [ EBI - ARRAY_EXPRESS ]   ALG1L2 [ SEEK ]   ALG1L2 [ MEM ]
Gene Expression Viewer (FireBrowse)ALG1L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644974
GTEX Portal (Tissue expression)ALG1L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J202   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J202  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J202
Splice isoforms : SwissVarC9J202
PhosPhoSitePlusC9J202
Domains : Interpro (EBI)ALG1-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ALG1L2
DMDM Disease mutations644974
Blocks (Seattle)ALG1L2
SuperfamilyC9J202
Human Protein AtlasENSG00000251287
Peptide AtlasC9J202
IPIIPI00914556   
Protein Interaction databases
DIP (DOE-UCLA)C9J202
IntAct (EBI)C9J202
FunCoupENSG00000251287
BioGRIDALG1L2
STRING (EMBL)ALG1L2
ZODIACALG1L2
Ontologies - Pathways
QuickGOC9J202
Ontology : AmiGOmannosyltransferase activity  endoplasmic reticulum  protein glycosylation  mannosylation  
Ontology : EGO-EBImannosyltransferase activity  endoplasmic reticulum  protein glycosylation  mannosylation  
NDEx NetworkALG1L2
Atlas of Cancer Signalling NetworkALG1L2
Wikipedia pathwaysALG1L2
Orthology - Evolution
OrthoDB644974
GeneTree (enSembl)ENSG00000251287
Phylogenetic Trees/Animal Genes : TreeFamALG1L2
HOVERGENC9J202
HOGENOMC9J202
Homologs : HomoloGeneALG1L2
Homology/Alignments : Family Browser (UCSC)ALG1L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG1L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG1L2
dbVarALG1L2
ClinVarALG1L2
1000_GenomesALG1L2 
Exome Variant ServerALG1L2
ExAC (Exome Aggregation Consortium)ALG1L2 (select the gene name)
Genetic variants : HAPMAP644974
Genomic Variants (DGV)ALG1L2 [DGVbeta]
DECIPHERALG1L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALG1L2 
Mutations
ICGC Data PortalALG1L2 
TCGA Data PortalALG1L2 
Broad Tumor PortalALG1L2
OASIS PortalALG1L2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDALG1L2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ALG1L2
DgiDB (Drug Gene Interaction Database)ALG1L2
DoCM (Curated mutations)ALG1L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG1L2 (select a term)
intoGenALG1L2
Cancer3DALG1L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenALG1L2
Genetic Testing Registry ALG1L2
NextProtC9J202 [Medical]
TSGene644974
GENETestsALG1L2
Target ValidationALG1L2
Huge Navigator ALG1L2 [HugePedia]
snp3D : Map Gene to Disease644974
BioCentury BCIQALG1L2
ClinGenALG1L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644974
Chemical/Pharm GKB GenePA165696819
Clinical trialALG1L2
Miscellaneous
canSAR (ICR)ALG1L2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG1L2
EVEXALG1L2
GoPubMedALG1L2
iHOPALG1L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:10 CEST 2017

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