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ALG9 (ALG9, alpha-1,2-mannosyltransferase)

Identity

Alias_namesDIBD1
disrupted in bipolar affective disorder 1
asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)
asparagine-linked glycosylation 9, alpha- 1,2-mannosyltransferase homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase)
asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae)
Other aliasCDG1L
LOH11CR1J
HGNC (Hugo) ALG9
LocusID (NCBI) 79796
Atlas_Id 60256
Location 11q23.1  [Link to chromosome band 11q23]
Location_base_pair Starts at 111652919 and ends at 111742305 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ALG9 (11q23.1) / SIK2 (11q23.1)PPP2R1B (11q23.1) / ALG9 (11q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALG9   15672
Cards
Entrez_Gene (NCBI)ALG9  79796  ALG9, alpha-1,2-mannosyltransferase
AliasesCDG1L; DIBD1; LOH11CR1J
GeneCards (Weizmann)ALG9
Ensembl hg19 (Hinxton)ENSG00000086848 [Gene_View]  chr11:111652919-111742305 [Contig_View]  ALG9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000086848 [Gene_View]  chr11:111652919-111742305 [Contig_View]  ALG9 [Vega]
ICGC DataPortalENSG00000086848
TCGA cBioPortalALG9
AceView (NCBI)ALG9
Genatlas (Paris)ALG9
WikiGenes79796
SOURCE (Princeton)ALG9
Genetics Home Reference (NIH)ALG9
Genomic and cartography
GoldenPath hg19 (UCSC)ALG9  -     chr11:111652919-111742305 -  11q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALG9  -     11q23.1   [Description]    (hg38-Dec_2013)
EnsemblALG9 - 11q23.1 [CytoView hg19]  ALG9 - 11q23.1 [CytoView hg38]
Mapping of homologs : NCBIALG9 [Mapview hg19]  ALG9 [Mapview hg38]
OMIM606941   608776   
Gene and transcription
Genbank (Entrez)AB096249 AF395532 AF454937 AK025498 AK172828
RefSeq transcript (Entrez)NM_001077690 NM_001077691 NM_001077692 NM_024740
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_009210 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)ALG9
Cluster EST : UnigeneHs.745155 [ NCBI ]
CGAP (NCI)Hs.745155
Alternative Splicing GalleryENSG00000086848
Gene ExpressionALG9 [ NCBI-GEO ]   ALG9 [ EBI - ARRAY_EXPRESS ]   ALG9 [ SEEK ]   ALG9 [ MEM ]
Gene Expression Viewer (FireBrowse)ALG9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79796
GTEX Portal (Tissue expression)ALG9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6U8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6U8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6U8
Splice isoforms : SwissVarQ9H6U8
Catalytic activity : Enzyme2.4.1.259 [ Enzyme-Expasy ]   2.4.1.2592.4.1.259 [ IntEnz-EBI ]   2.4.1.259 [ BRENDA ]   2.4.1.259 [ KEGG ]   
PhosPhoSitePlusQ9H6U8
Domains : Interpro (EBI)GPI_mannosylTrfase   
Domain families : Pfam (Sanger)Glyco_transf_22 (PF03901)   
Domain families : Pfam (NCBI)pfam03901   
Conserved Domain (NCBI)ALG9
DMDM Disease mutations79796
Blocks (Seattle)ALG9
SuperfamilyQ9H6U8
Human Protein AtlasENSG00000086848
Peptide AtlasQ9H6U8
HPRD09504
IPIIPI00966631   IPI01012386   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6U8
IntAct (EBI)Q9H6U8
FunCoupENSG00000086848
BioGRIDALG9
STRING (EMBL)ALG9
ZODIACALG9
Ontologies - Pathways
QuickGOQ9H6U8
Ontology : AmiGOmannosyltransferase activity  endoplasmic reticulum membrane  dolichol-linked oligosaccharide biosynthetic process  membrane  integral component of membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity  mannosylation  mannosylation  
Ontology : EGO-EBImannosyltransferase activity  endoplasmic reticulum membrane  dolichol-linked oligosaccharide biosynthetic process  membrane  integral component of membrane  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity  mannosylation  mannosylation  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkALG9
Atlas of Cancer Signalling NetworkALG9
Wikipedia pathwaysALG9
Orthology - Evolution
OrthoDB79796
GeneTree (enSembl)ENSG00000086848
Phylogenetic Trees/Animal Genes : TreeFamALG9
HOVERGENQ9H6U8
HOGENOMQ9H6U8
Homologs : HomoloGeneALG9
Homology/Alignments : Family Browser (UCSC)ALG9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALG9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALG9
dbVarALG9
ClinVarALG9
1000_GenomesALG9 
Exome Variant ServerALG9
ExAC (Exome Aggregation Consortium)ALG9 (select the gene name)
Genetic variants : HAPMAP79796
Genomic Variants (DGV)ALG9 [DGVbeta]
DECIPHER (Syndromes)11:111652919-111742305  ENSG00000086848
CONAN: Copy Number AnalysisALG9 
Mutations
ICGC Data PortalALG9 
TCGA Data PortalALG9 
Broad Tumor PortalALG9
OASIS PortalALG9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALG9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALG9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ALG9
DgiDB (Drug Gene Interaction Database)ALG9
DoCM (Curated mutations)ALG9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALG9 (select a term)
intoGenALG9
Cancer3DALG9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606941    608776   
Orphanet11354   
MedgenALG9
Genetic Testing Registry ALG9
NextProtQ9H6U8 [Medical]
TSGene79796
GENETestsALG9
Huge Navigator ALG9 [HugePedia]
snp3D : Map Gene to Disease79796
BioCentury BCIQALG9
ClinGenALG9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79796
Chemical/Pharm GKB GenePA134887582
Clinical trialALG9
Miscellaneous
canSAR (ICR)ALG9 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALG9
EVEXALG9
GoPubMedALG9
iHOPALG9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:07 CET 2017

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