Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ALKAL1 (ALK and LTK ligand 1)

Identity

Other aliasAUGA
AUGB
FAM150A
UNQ9433
HGNC (Hugo) ALKAL1
LocusID (NCBI) 389658
Atlas_Id 56836
Location 8q11.23  [Link to chromosome band 8q11]
Location_base_pair Starts at 52534037 and ends at 52565461 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALKAL1   33775
Cards
Entrez_Gene (NCBI)ALKAL1  389658  ALK and LTK ligand 1
AliasesAUGA; AUGB; FAM150A; UNQ9433
GeneCards (Weizmann)ALKAL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:52534037-52565461 [Contig_View]  ALKAL1 [Vega]
TCGA cBioPortalALKAL1
AceView (NCBI)ALKAL1
Genatlas (Paris)ALKAL1
WikiGenes389658
SOURCE (Princeton)ALKAL1
Genetics Home Reference (NIH)ALKAL1
Genomic and cartography
GoldenPath hg38 (UCSC)ALKAL1  -     chr8:52534037-52565461 -  8q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALKAL1  -     8q11.23   [Description]    (hg19-Feb_2009)
EnsemblALKAL1 - 8q11.23 [CytoView hg19]  ALKAL1 - 8q11.23 [CytoView hg38]
Mapping of homologs : NCBIALKAL1 [Mapview hg19]  ALKAL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI858920 AY358213 BC130641 BC130643 BC144534
RefSeq transcript (Entrez)NM_207413
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALKAL1
Cluster EST : UnigeneHs.527111 [ NCBI ]
CGAP (NCI)Hs.527111
Gene ExpressionALKAL1 [ NCBI-GEO ]   ALKAL1 [ EBI - ARRAY_EXPRESS ]   ALKAL1 [ SEEK ]   ALKAL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALKAL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389658
GTEX Portal (Tissue expression)ALKAL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXT8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXT8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXT8
Splice isoforms : SwissVarQ6UXT8
PhosPhoSitePlusQ6UXT8
Domains : Interpro (EBI)FAM150   
Domain families : Pfam (Sanger)FAM150 (PF15129)   
Domain families : Pfam (NCBI)pfam15129   
Conserved Domain (NCBI)ALKAL1
DMDM Disease mutations389658
Blocks (Seattle)ALKAL1
SuperfamilyQ6UXT8
Peptide AtlasQ6UXT8
IPIIPI00399032   IPI00981794   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXT8
IntAct (EBI)Q6UXT8
BioGRIDALKAL1
STRING (EMBL)ALKAL1
ZODIACALKAL1
Ontologies - Pathways
QuickGOQ6UXT8
Ontology : AmiGOprotein binding  extracellular region  positive regulation of neuron projection development  receptor signaling protein tyrosine kinase activator activity  receptor tyrosine kinase binding  positive regulation of protein tyrosine kinase activity  positive regulation of ERK1 and ERK2 cascade  positive regulation of ERK5 cascade  
Ontology : EGO-EBIprotein binding  extracellular region  positive regulation of neuron projection development  receptor signaling protein tyrosine kinase activator activity  receptor tyrosine kinase binding  positive regulation of protein tyrosine kinase activity  positive regulation of ERK1 and ERK2 cascade  positive regulation of ERK5 cascade  
NDEx NetworkALKAL1
Atlas of Cancer Signalling NetworkALKAL1
Wikipedia pathwaysALKAL1
Orthology - Evolution
OrthoDB389658
Phylogenetic Trees/Animal Genes : TreeFamALKAL1
HOVERGENQ6UXT8
HOGENOMQ6UXT8
Homologs : HomoloGeneALKAL1
Homology/Alignments : Family Browser (UCSC)ALKAL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALKAL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALKAL1
dbVarALKAL1
ClinVarALKAL1
1000_GenomesALKAL1 
Exome Variant ServerALKAL1
ExAC (Exome Aggregation Consortium)ALKAL1 (select the gene name)
Genetic variants : HAPMAP389658
Genomic Variants (DGV)ALKAL1 [DGVbeta]
DECIPHERALKAL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALKAL1 
Mutations
ICGC Data PortalALKAL1 
TCGA Data PortalALKAL1 
Broad Tumor PortalALKAL1
OASIS PortalALKAL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDALKAL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALKAL1
DgiDB (Drug Gene Interaction Database)ALKAL1
DoCM (Curated mutations)ALKAL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALKAL1 (select a term)
intoGenALKAL1
Cancer3DALKAL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenALKAL1
Genetic Testing Registry ALKAL1
NextProtQ6UXT8 [Medical]
TSGene389658
GENETestsALKAL1
Target ValidationALKAL1
Huge Navigator ALKAL1 [HugePedia]
snp3D : Map Gene to Disease389658
BioCentury BCIQALKAL1
ClinGenALKAL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389658
Chemical/Pharm GKB GenePA162386433
Clinical trialALKAL1
Miscellaneous
canSAR (ICR)ALKAL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALKAL1
EVEXALKAL1
GoPubMedALKAL1
iHOPALKAL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:56:56 CEST 2017

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