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ALKBH6 (alkB homolog 6)

Identity

Alias_namesalkB
Alias_symbol (synonym)MGC15677
Other aliasABH6
HGNC (Hugo) ALKBH6
LocusID (NCBI) 84964
Atlas_Id 43080
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36009116 and ends at 36014243 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALKBH6   28243
Cards
Entrez_Gene (NCBI)ALKBH6  84964  alkB homolog 6
AliasesABH6
GeneCards (Weizmann)ALKBH6
Ensembl hg19 (Hinxton)ENSG00000239382 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239382 [Gene_View]  chr19:36009116-36014243 [Contig_View]  ALKBH6 [Vega]
ICGC DataPortalENSG00000239382
TCGA cBioPortalALKBH6
AceView (NCBI)ALKBH6
Genatlas (Paris)ALKBH6
WikiGenes84964
SOURCE (Princeton)ALKBH6
Genetics Home Reference (NIH)ALKBH6
Genomic and cartography
GoldenPath hg38 (UCSC)ALKBH6  -     chr19:36009116-36014243 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALKBH6  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblALKBH6 - 19q13.12 [CytoView hg19]  ALKBH6 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIALKBH6 [Mapview hg19]  ALKBH6 [Mapview hg38]
OMIM613304   
Gene and transcription
Genbank (Entrez)AB273714 AK304805 AK310130 AK310704 AK314150
RefSeq transcript (Entrez)NM_001297701 NM_032878 NM_198867
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALKBH6
Cluster EST : UnigeneHs.71941 [ NCBI ]
CGAP (NCI)Hs.71941
Alternative Splicing GalleryENSG00000239382
Gene ExpressionALKBH6 [ NCBI-GEO ]   ALKBH6 [ EBI - ARRAY_EXPRESS ]   ALKBH6 [ SEEK ]   ALKBH6 [ MEM ]
Gene Expression Viewer (FireBrowse)ALKBH6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84964
GTEX Portal (Tissue expression)ALKBH6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KRA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KRA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KRA9
Splice isoforms : SwissVarQ3KRA9
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusQ3KRA9
Domaine pattern : Prosite (Expaxy)FE2OG_OXY (PS51471)   
Domains : Interpro (EBI)AlkB-like    ALKBH6    Oxoglu/Fe-dep_dioxygenase   
Domain families : Pfam (Sanger)2OG-FeII_Oxy_2 (PF13532)   
Domain families : Pfam (NCBI)pfam13532   
Conserved Domain (NCBI)ALKBH6
DMDM Disease mutations84964
Blocks (Seattle)ALKBH6
SuperfamilyQ3KRA9
Human Protein AtlasENSG00000239382
Peptide AtlasQ3KRA9
HPRD17510
IPIIPI00792409   IPI00394729   IPI00797675   IPI00884986   IPI00063590   IPI00983317   IPI00983975   IPI00983089   IPI00985021   IPI00981598   
Protein Interaction databases
DIP (DOE-UCLA)Q3KRA9
IntAct (EBI)Q3KRA9
FunCoupENSG00000239382
BioGRIDALKBH6
STRING (EMBL)ALKBH6
ZODIACALKBH6
Ontologies - Pathways
QuickGOQ3KRA9
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  focal adhesion  ferrous iron binding  dioxygenase activity  oxidation-reduction process  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  focal adhesion  ferrous iron binding  dioxygenase activity  oxidation-reduction process  
NDEx NetworkALKBH6
Atlas of Cancer Signalling NetworkALKBH6
Wikipedia pathwaysALKBH6
Orthology - Evolution
OrthoDB84964
GeneTree (enSembl)ENSG00000239382
Phylogenetic Trees/Animal Genes : TreeFamALKBH6
HOVERGENQ3KRA9
HOGENOMQ3KRA9
Homologs : HomoloGeneALKBH6
Homology/Alignments : Family Browser (UCSC)ALKBH6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALKBH6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALKBH6
dbVarALKBH6
ClinVarALKBH6
1000_GenomesALKBH6 
Exome Variant ServerALKBH6
ExAC (Exome Aggregation Consortium)ALKBH6 (select the gene name)
Genetic variants : HAPMAP84964
Genomic Variants (DGV)ALKBH6 [DGVbeta]
DECIPHERALKBH6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALKBH6 
Mutations
ICGC Data PortalALKBH6 
TCGA Data PortalALKBH6 
Broad Tumor PortalALKBH6
OASIS PortalALKBH6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALKBH6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALKBH6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALKBH6
DgiDB (Drug Gene Interaction Database)ALKBH6
DoCM (Curated mutations)ALKBH6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALKBH6 (select a term)
intoGenALKBH6
Cancer3DALKBH6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613304   
Orphanet
MedgenALKBH6
Genetic Testing Registry ALKBH6
NextProtQ3KRA9 [Medical]
TSGene84964
GENETestsALKBH6
Huge Navigator ALKBH6 [HugePedia]
snp3D : Map Gene to Disease84964
BioCentury BCIQALKBH6
ClinGenALKBH6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84964
Chemical/Pharm GKB GenePA143485295
Clinical trialALKBH6
Miscellaneous
canSAR (ICR)ALKBH6 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALKBH6
EVEXALKBH6
GoPubMedALKBH6
iHOPALKBH6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:05:44 CEST 2017

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