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ALKBH7 (alkB homolog 7)

Identity

Alias_namesSPATA11
spermatogenesis associated 11
alkB, alkylation repair homolog 7 (E. coli)
Alias_symbol (synonym)MGC10974
Other aliasABH7
UNQ6002
HGNC (Hugo) ALKBH7
LocusID (NCBI) 84266
Atlas_Id 43081
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6372433 and ends at 6375250 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALKBH7   21306
Cards
Entrez_Gene (NCBI)ALKBH7  84266  alkB homolog 7
AliasesABH7; SPATA11; UNQ6002
GeneCards (Weizmann)ALKBH7
Ensembl hg19 (Hinxton)ENSG00000125652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125652 [Gene_View]  chr19:6372433-6375250 [Contig_View]  ALKBH7 [Vega]
ICGC DataPortalENSG00000125652
TCGA cBioPortalALKBH7
AceView (NCBI)ALKBH7
Genatlas (Paris)ALKBH7
WikiGenes84266
SOURCE (Princeton)ALKBH7
Genetics Home Reference (NIH)ALKBH7
Genomic and cartography
GoldenPath hg38 (UCSC)ALKBH7  -     chr19:6372433-6375250 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALKBH7  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblALKBH7 - 19p13.3 [CytoView hg19]  ALKBH7 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIALKBH7 [Mapview hg19]  ALKBH7 [Mapview hg38]
OMIM613305   
Gene and transcription
Genbank (Entrez)AK223336 AK311956 AY358858 AY427650 BC004393
RefSeq transcript (Entrez)NM_032306
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALKBH7
Cluster EST : UnigeneHs.111099 [ NCBI ]
CGAP (NCI)Hs.111099
Alternative Splicing GalleryENSG00000125652
Gene ExpressionALKBH7 [ NCBI-GEO ]   ALKBH7 [ EBI - ARRAY_EXPRESS ]   ALKBH7 [ SEEK ]   ALKBH7 [ MEM ]
Gene Expression Viewer (FireBrowse)ALKBH7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84266
GTEX Portal (Tissue expression)ALKBH7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT30
Splice isoforms : SwissVarQ9BT30
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusQ9BT30
Domains : Interpro (EBI)AlkB-like    ALKBH7   
Domain families : Pfam (Sanger)2OG-FeII_Oxy_2 (PF13532)   
Domain families : Pfam (NCBI)pfam13532   
Conserved Domain (NCBI)ALKBH7
DMDM Disease mutations84266
Blocks (Seattle)ALKBH7
PDB (SRS)4QKB    4QKD    4QKF   
PDB (PDBSum)4QKB    4QKD    4QKF   
PDB (IMB)4QKB    4QKD    4QKF   
PDB (RSDB)4QKB    4QKD    4QKF   
Structural Biology KnowledgeBase4QKB    4QKD    4QKF   
SCOP (Structural Classification of Proteins)4QKB    4QKD    4QKF   
CATH (Classification of proteins structures)4QKB    4QKD    4QKF   
SuperfamilyQ9BT30
Human Protein AtlasENSG00000125652
Peptide AtlasQ9BT30
HPRD15425
IPIIPI00031118   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT30
IntAct (EBI)Q9BT30
FunCoupENSG00000125652
BioGRIDALKBH7
STRING (EMBL)ALKBH7
ZODIACALKBH7
Ontologies - Pathways
QuickGOQ9BT30
Ontology : AmiGOmitochondrial matrix  fatty acid metabolic process  cellular response to DNA damage stimulus  regulation of lipid storage  metal ion binding  dioxygenase activity  oxidation-reduction process  regulation of mitochondrial membrane permeability involved in programmed necrotic cell death  
Ontology : EGO-EBImitochondrial matrix  fatty acid metabolic process  cellular response to DNA damage stimulus  regulation of lipid storage  metal ion binding  dioxygenase activity  oxidation-reduction process  regulation of mitochondrial membrane permeability involved in programmed necrotic cell death  
NDEx NetworkALKBH7
Atlas of Cancer Signalling NetworkALKBH7
Wikipedia pathwaysALKBH7
Orthology - Evolution
OrthoDB84266
GeneTree (enSembl)ENSG00000125652
Phylogenetic Trees/Animal Genes : TreeFamALKBH7
HOVERGENQ9BT30
HOGENOMQ9BT30
Homologs : HomoloGeneALKBH7
Homology/Alignments : Family Browser (UCSC)ALKBH7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALKBH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALKBH7
dbVarALKBH7
ClinVarALKBH7
1000_GenomesALKBH7 
Exome Variant ServerALKBH7
ExAC (Exome Aggregation Consortium)ALKBH7 (select the gene name)
Genetic variants : HAPMAP84266
Genomic Variants (DGV)ALKBH7 [DGVbeta]
DECIPHERALKBH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALKBH7 
Mutations
ICGC Data PortalALKBH7 
TCGA Data PortalALKBH7 
Broad Tumor PortalALKBH7
OASIS PortalALKBH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALKBH7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALKBH7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ALKBH7
DgiDB (Drug Gene Interaction Database)ALKBH7
DoCM (Curated mutations)ALKBH7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALKBH7 (select a term)
intoGenALKBH7
Cancer3DALKBH7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613305   
Orphanet
MedgenALKBH7
Genetic Testing Registry ALKBH7
NextProtQ9BT30 [Medical]
TSGene84266
GENETestsALKBH7
Huge Navigator ALKBH7 [HugePedia]
snp3D : Map Gene to Disease84266
BioCentury BCIQALKBH7
ClinGenALKBH7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84266
Chemical/Pharm GKB GenePA134905040
Clinical trialALKBH7
Miscellaneous
canSAR (ICR)ALKBH7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALKBH7
EVEXALKBH7
GoPubMedALKBH7
iHOPALKBH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:05:45 CEST 2017

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