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ALLC (allantoicase)

Identity

Alias_symbol (synonym)ALC
Other alias
HGNC (Hugo) ALLC
LocusID (NCBI) 55821
Atlas_Id 54119
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3705786 and ends at 3750260 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CRHR1-IT1 (-) / ALLC (2p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)ALLC   17377
Cards
Entrez_Gene (NCBI)ALLC  55821  allantoicase
AliasesALC
GeneCards (Weizmann)ALLC
Ensembl hg19 (Hinxton)ENSG00000151360 [Gene_View]  chr2:3705786-3750260 [Contig_View]  ALLC [Vega]
Ensembl hg38 (Hinxton)ENSG00000151360 [Gene_View]  chr2:3705786-3750260 [Contig_View]  ALLC [Vega]
ICGC DataPortalENSG00000151360
TCGA cBioPortalALLC
AceView (NCBI)ALLC
Genatlas (Paris)ALLC
WikiGenes55821
SOURCE (Princeton)ALLC
Genetics Home Reference (NIH)ALLC
Genomic and cartography
GoldenPath hg19 (UCSC)ALLC  -     chr2:3705786-3750260 +  2p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALLC  -     2p25.3   [Description]    (hg38-Dec_2013)
EnsemblALLC - 2p25.3 [CytoView hg19]  ALLC - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBIALLC [Mapview hg19]  ALLC [Mapview hg38]
OMIM612396   
Gene and transcription
Genbank (Entrez)AF215924 AF395820 AK302299 BC029652 BC035356
RefSeq transcript (Entrez)NM_018436 NM_199232
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929297
Consensus coding sequences : CCDS (NCBI)ALLC
Cluster EST : UnigeneHs.97899 [ NCBI ]
CGAP (NCI)Hs.97899
Alternative Splicing GalleryENSG00000151360
Gene ExpressionALLC [ NCBI-GEO ]   ALLC [ EBI - ARRAY_EXPRESS ]   ALLC [ SEEK ]   ALLC [ MEM ]
Gene Expression Viewer (FireBrowse)ALLC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55821
GTEX Portal (Tissue expression)ALLC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M5
Splice isoforms : SwissVarQ8N6M5
Catalytic activity : Enzyme3.5.3.4 [ Enzyme-Expasy ]   3.5.3.43.5.3.4 [ IntEnz-EBI ]   3.5.3.4 [ BRENDA ]   3.5.3.4 [ KEGG ]   
PhosPhoSitePlusQ8N6M5
Domains : Interpro (EBI)Allantoicase    Allantoicase_dom    Galactose-bd-like   
Domain families : Pfam (Sanger)Allantoicase (PF03561)   
Domain families : Pfam (NCBI)pfam03561   
Conserved Domain (NCBI)ALLC
DMDM Disease mutations55821
Blocks (Seattle)ALLC
SuperfamilyQ8N6M5
Human Protein AtlasENSG00000151360
Peptide AtlasQ8N6M5
HPRD10642
IPIIPI00644362   IPI00167035   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M5
IntAct (EBI)Q8N6M5
FunCoupENSG00000151360
BioGRIDALLC
STRING (EMBL)ALLC
ZODIACALLC
Ontologies - Pathways
QuickGOQ8N6M5
Ontology : AmiGOallantoin catabolic process  allantoicase activity  
Ontology : EGO-EBIallantoin catabolic process  allantoicase activity  
Pathways : KEGGPurine metabolism   
NDEx NetworkALLC
Atlas of Cancer Signalling NetworkALLC
Wikipedia pathwaysALLC
Orthology - Evolution
OrthoDB55821
GeneTree (enSembl)ENSG00000151360
Phylogenetic Trees/Animal Genes : TreeFamALLC
HOVERGENQ8N6M5
HOGENOMQ8N6M5
Homologs : HomoloGeneALLC
Homology/Alignments : Family Browser (UCSC)ALLC
Gene fusions - Rearrangements
Fusion : MitelmanCRHR1-IT1/ALLC [-/2p25.3]  [t(2;17)(p25;q21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALLC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALLC
dbVarALLC
ClinVarALLC
1000_GenomesALLC 
Exome Variant ServerALLC
ExAC (Exome Aggregation Consortium)ALLC (select the gene name)
Genetic variants : HAPMAP55821
Genomic Variants (DGV)ALLC [DGVbeta]
DECIPHER (Syndromes)2:3705786-3750260  ENSG00000151360
CONAN: Copy Number AnalysisALLC 
Mutations
ICGC Data PortalALLC 
TCGA Data PortalALLC 
Broad Tumor PortalALLC
OASIS PortalALLC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALLC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALLC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALLC
DgiDB (Drug Gene Interaction Database)ALLC
DoCM (Curated mutations)ALLC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALLC (select a term)
intoGenALLC
Cancer3DALLC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612396   
Orphanet
MedgenALLC
Genetic Testing Registry ALLC
NextProtQ8N6M5 [Medical]
TSGene55821
GENETestsALLC
Huge Navigator ALLC [HugePedia]
snp3D : Map Gene to Disease55821
BioCentury BCIQALLC
ClinGenALLC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55821
Chemical/Pharm GKB GenePA24720
Clinical trialALLC
Miscellaneous
canSAR (ICR)ALLC (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALLC
EVEXALLC
GoPubMedALLC
iHOPALLC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:52:12 CEST 2017

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