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ALLC (allantoicase)

Identity

Alias (NCBI)ALC
HGNC (Hugo) ALLC
HGNC Alias symbALC
LocusID (NCBI) 55821
Atlas_Id 54119
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3658200 and ends at 3702670 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRHR1-IT1 (-) / ALLC (2p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ALLC   17377
Cards
Entrez_Gene (NCBI)ALLC    allantoicase
AliasesALC
GeneCards (Weizmann)ALLC
Ensembl hg19 (Hinxton)ENSG00000151360 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151360 [Gene_View]  ENSG00000151360 [Sequence]  chr2:3658200-3702670 [Contig_View]  ALLC [Vega]
ICGC DataPortalENSG00000151360
TCGA cBioPortalALLC
AceView (NCBI)ALLC
Genatlas (Paris)ALLC
SOURCE (Princeton)ALLC
Genetics Home Reference (NIH)ALLC
Genomic and cartography
GoldenPath hg38 (UCSC)ALLC  -     chr2:3658200-3702670 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALLC  -     2p25.3   [Description]    (hg19-Feb_2009)
GoldenPathALLC - 2p25.3 [CytoView hg19]  ALLC - 2p25.3 [CytoView hg38]
ImmunoBaseENSG00000151360
Genome Data Viewer NCBIALLC [Mapview hg19]  
OMIM612396   
Gene and transcription
Genbank (Entrez)AF215924 AF395820 AK302299 BC029652 BC035356
RefSeq transcript (Entrez)NM_018436 NM_199232
Consensus coding sequences : CCDS (NCBI)ALLC
Gene ExpressionALLC [ NCBI-GEO ]   ALLC [ EBI - ARRAY_EXPRESS ]   ALLC [ SEEK ]   ALLC [ MEM ]
Gene Expression Viewer (FireBrowse)ALLC [ Firebrowse - Broad ]
GenevisibleExpression of ALLC in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55821
GTEX Portal (Tissue expression)ALLC
Human Protein AtlasENSG00000151360-ALLC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6M5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6M5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6M5
Catalytic activity : Enzyme3.5.3.4 [ Enzyme-Expasy ]   3.5.3.43.5.3.4 [ IntEnz-EBI ]   3.5.3.4 [ BRENDA ]   3.5.3.4 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ8N6M5
Domains : Interpro (EBI)Allantoicase    Allantoicase_dom    Galactose-bd-like_sf   
Domain families : Pfam (Sanger)Allantoicase (PF03561)   
Domain families : Pfam (NCBI)pfam03561   
Conserved Domain (NCBI)ALLC
SuperfamilyQ8N6M5
AlphaFold pdb e-kbQ8N6M5   
Human Protein Atlas [tissue]ENSG00000151360-ALLC [tissue]
HPRD10642
Protein Interaction databases
DIP (DOE-UCLA)Q8N6M5
IntAct (EBI)Q8N6M5
BioGRIDALLC
STRING (EMBL)ALLC
ZODIACALLC
Ontologies - Pathways
QuickGOQ8N6M5
Ontology : AmiGOallantoin catabolic process  allantoicase activity  
Ontology : EGO-EBIallantoin catabolic process  allantoicase activity  
Pathways : KEGGPurine metabolism   
NDEx NetworkALLC
Atlas of Cancer Signalling NetworkALLC
Wikipedia pathwaysALLC
Orthology - Evolution
OrthoDB55821
GeneTree (enSembl)ENSG00000151360
Phylogenetic Trees/Animal Genes : TreeFamALLC
Homologs : HomoloGeneALLC
Homology/Alignments : Family Browser (UCSC)ALLC
Gene fusions - Rearrangements
Fusion : MitelmanCRHR1-IT1/ALLC [-/2p25.3]  
Fusion : QuiverALLC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALLC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALLC
dbVarALLC
ClinVarALLC
MonarchALLC
1000_GenomesALLC 
Exome Variant ServerALLC
GNOMAD BrowserENSG00000151360
Varsome BrowserALLC
ACMGALLC variants
VarityQ8N6M5
Genomic Variants (DGV)ALLC [DGVbeta]
DECIPHERALLC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALLC 
Mutations
ICGC Data PortalALLC 
TCGA Data PortalALLC 
Broad Tumor PortalALLC
OASIS PortalALLC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALLC  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DALLC
Mutations and Diseases : HGMDALLC
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaALLC
DgiDB (Drug Gene Interaction Database)ALLC
DoCM (Curated mutations)ALLC
CIViC (Clinical Interpretations of Variants in Cancer)ALLC
Cancer3DALLC
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612396   
Orphanet
DisGeNETALLC
MedgenALLC
Genetic Testing Registry ALLC
NextProtQ8N6M5 [Medical]
GENETestsALLC
Target ValidationALLC
Huge Navigator ALLC [HugePedia]
ClinGenALLC
Clinical trials, drugs, therapy
MyCancerGenomeALLC
Protein Interactions : CTDALLC
Pharm GKB GenePA24720
PharosQ8N6M5
Clinical trialALLC
Miscellaneous
canSAR (ICR)ALLC
HarmonizomeALLC
DataMed IndexALLC
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXALLC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:59:10 CEST 2021

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