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ALMS1-IT1 (ALMS1 intronic transcript 1)

Identity

Alias_namesALMS1 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) ALMS1-IT1
LocusID (NCBI) 100874291
Atlas_Id 60259
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73684230 and ends at 73686604 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALMS1-IT1   41305
Cards
Entrez_Gene (NCBI)ALMS1-IT1  100874291  ALMS1 intronic transcript 1
Aliases
GeneCards (Weizmann)ALMS1-IT1
Ensembl hg19 (Hinxton) [Gene_View]  chr2:73684230-73686604 [Contig_View]  ALMS1-IT1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:73684230-73686604 [Contig_View]  ALMS1-IT1 [Vega]
TCGA cBioPortalALMS1-IT1
AceView (NCBI)ALMS1-IT1
Genatlas (Paris)ALMS1-IT1
WikiGenes100874291
SOURCE (Princeton)ALMS1-IT1
Genetics Home Reference (NIH)ALMS1-IT1
Genomic and cartography
GoldenPath hg19 (UCSC)ALMS1-IT1  -     chr2:73684230-73686604 +  2p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALMS1-IT1  -     2p13.1   [Description]    (hg38-Dec_2013)
EnsemblALMS1-IT1 - 2p13.1 [CytoView hg19]  ALMS1-IT1 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIALMS1-IT1 [Mapview hg19]  ALMS1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041487 HG494197
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_011690 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)ALMS1-IT1
Cluster EST : UnigeneHs.668279 [ NCBI ]
CGAP (NCI)Hs.668279
Gene ExpressionALMS1-IT1 [ NCBI-GEO ]   ALMS1-IT1 [ EBI - ARRAY_EXPRESS ]   ALMS1-IT1 [ SEEK ]   ALMS1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALMS1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874291
GTEX Portal (Tissue expression)ALMS1-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ALMS1-IT1
DMDM Disease mutations100874291
Blocks (Seattle)ALMS1-IT1
Protein Interaction databases
BioGRIDALMS1-IT1
STRING (EMBL)ALMS1-IT1
ZODIACALMS1-IT1
Ontologies - Pathways
Huge Navigator ALMS1-IT1 [HugePedia]
snp3D : Map Gene to Disease100874291
BioCentury BCIQALMS1-IT1
ClinGenALMS1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874291
Clinical trialALMS1-IT1
Miscellaneous
canSAR (ICR)ALMS1-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineALMS1-IT1
EVEXALMS1-IT1
GoPubMedALMS1-IT1
iHOPALMS1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:07 CET 2017

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