Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ALMS1P1 (ALMS1, centrosome and basal body associated protein pseudogene 1)

Identity

Alias_namesALMS1L
ALMS1P
Alstrom syndrome 1-like
Alstrom syndrome 1 pseudogene
Other alias
HGNC (Hugo) ALMS1P1
LocusID (NCBI) 200420
Atlas_Id 78202
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73640978 and ends at 73673505 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALMS1P1   29586
Cards
Entrez_Gene (NCBI)ALMS1P1  200420  ALMS1, centrosome and basal body associated protein pseudogene 1
AliasesALMS1L; ALMS1P
GeneCards (Weizmann)ALMS1P1
Ensembl hg19 (Hinxton)ENSG00000163016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163016 [Gene_View]  chr2:73640978-73673505 [Contig_View]  ALMS1P1 [Vega]
ICGC DataPortalENSG00000163016
TCGA cBioPortalALMS1P1
AceView (NCBI)ALMS1P1
Genatlas (Paris)ALMS1P1
WikiGenes200420
SOURCE (Princeton)ALMS1P1
Genetics Home Reference (NIH)ALMS1P1
Genomic and cartography
GoldenPath hg38 (UCSC)ALMS1P1  -     chr2:73640978-73673505 +  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALMS1P1  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblALMS1P1 - 2p13.1 [CytoView hg19]  ALMS1P1 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIALMS1P1 [Mapview hg19]  ALMS1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307160 BC014492 DA427693 DQ893051 DQ896299
RefSeq transcript (Entrez)NM_145300
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALMS1P1
Cluster EST : UnigeneHs.745426 [ NCBI ]
CGAP (NCI)Hs.745426
Alternative Splicing GalleryENSG00000163016
Gene ExpressionALMS1P1 [ NCBI-GEO ]   ALMS1P1 [ EBI - ARRAY_EXPRESS ]   ALMS1P1 [ SEEK ]   ALMS1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)ALMS1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)200420
GTEX Portal (Tissue expression)ALMS1P1
Human Protein AtlasENSG00000163016-ALMS1P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ALMS1P1
DMDM Disease mutations200420
Blocks (Seattle)ALMS1P1
Human Protein Atlas [tissue]ENSG00000163016-ALMS1P1 [tissue]
HPRD11245
IPIIPI00064744   
Protein Interaction databases
FunCoupENSG00000163016
BioGRIDALMS1P1
STRING (EMBL)ALMS1P1
ZODIACALMS1P1
Ontologies - Pathways
Huge Navigator ALMS1P1 [HugePedia]
snp3D : Map Gene to Disease200420
BioCentury BCIQALMS1P1
ClinGenALMS1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200420
Clinical trialALMS1P1
Miscellaneous
canSAR (ICR)ALMS1P1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALMS1P1
EVEXALMS1P1
GoPubMedALMS1P1
iHOPALMS1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:52 CET 2017

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