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ALPG (alkaline phosphatase, germ cell)

Identity

Alias (NCBI)ALPPL
ALPPL2
GCAP
HGNC (Hugo) ALPG
HGNC Alias symbGCAP
HGNC Alias namegerm cell alkaline phosphatase
HGNC Previous nameALPPL2
HGNC Previous namealkaline phosphatase, placental like 2
LocusID (NCBI) 251
Atlas_Id 624
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232406844 and ends at 232410714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Testis: Spermatocytic seminoma

External links

Nomenclature
HGNC (Hugo)ALPG   441
Cards
Entrez_Gene (NCBI)ALPG    alkaline phosphatase, germ cell
AliasesALPPL; ALPPL2; GCAP
GeneCards (Weizmann)ALPG
Ensembl hg19 (Hinxton)ENSG00000163286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163286 [Gene_View]  ENSG00000163286 [Sequence]  chr2:232406844-232410714 [Contig_View]  ALPG [Vega]
ICGC DataPortalENSG00000163286
TCGA cBioPortalALPG
AceView (NCBI)ALPG
Genatlas (Paris)ALPG
SOURCE (Princeton)ALPG
Genetics Home Reference (NIH)ALPG
Genomic and cartography
GoldenPath hg38 (UCSC)ALPG  -     chr2:232406844-232410714 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALPG  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathALPG - 2q37.1 [CytoView hg19]  ALPG - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000163286
genome Data Viewer NCBIALPG [Mapview hg19]  
OMIM171810   
Gene and transcription
Genbank (Entrez)AB012642 AI982769 AK293017 BC014139 DB194270
RefSeq transcript (Entrez)NM_031313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALPG
Alternative Splicing GalleryENSG00000163286
Gene ExpressionALPG [ NCBI-GEO ]   ALPG [ EBI - ARRAY_EXPRESS ]   ALPG [ SEEK ]   ALPG [ MEM ]
Gene Expression Viewer (FireBrowse)ALPG [ Firebrowse - Broad ]
GenevisibleExpression of ALPG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)251
GTEX Portal (Tissue expression)ALPG
Human Protein AtlasENSG00000163286-ALPG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10696
Splice isoforms : SwissVarP10696
PhosPhoSitePlusP10696
Domaine pattern : Prosite (Expaxy)ALKALINE_PHOSPHATASE (PS00123)   
Domains : Interpro (EBI)Alkaline_phosphatase    Alkaline_phosphatase_AS    Alkaline_phosphatase_core_sf   
Domain families : Pfam (Sanger)Alk_phosphatase (PF00245)   
Domain families : Pfam (NCBI)pfam00245   
Domain families : Smart (EMBL)alkPPc (SM00098)  
Conserved Domain (NCBI)ALPG
Blocks (Seattle)ALPG
SuperfamilyP10696
Human Protein Atlas [tissue]ENSG00000163286-ALPG [tissue]
Peptide AtlasP10696
HPRD01380
IPIIPI00290380   
Protein Interaction databases
DIP (DOE-UCLA)P10696
IntAct (EBI)P10696
BioGRIDALPG
STRING (EMBL)ALPG
ZODIACALPG
Ontologies - Pathways
QuickGOP10696
Ontology : AmiGOalkaline phosphatase activity  alkaline phosphatase activity  alkaline phosphatase activity  extracellular region  plasma membrane  plasma membrane  plasma membrane  dephosphorylation  anchored component of membrane  metal ion binding  
Ontology : EGO-EBIalkaline phosphatase activity  alkaline phosphatase activity  alkaline phosphatase activity  extracellular region  plasma membrane  plasma membrane  plasma membrane  dephosphorylation  anchored component of membrane  metal ion binding  
NDEx NetworkALPG
Atlas of Cancer Signalling NetworkALPG
Wikipedia pathwaysALPG
Orthology - Evolution
OrthoDB251
GeneTree (enSembl)ENSG00000163286
Phylogenetic Trees/Animal Genes : TreeFamALPG
HOGENOMP10696
Homologs : HomoloGeneALPG
Homology/Alignments : Family Browser (UCSC)ALPG
Gene fusions - Rearrangements
Fusion : QuiverALPG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALPG [hg38]
dbVarALPG
ClinVarALPG
MonarchALPG
1000_GenomesALPG 
Exome Variant ServerALPG
GNOMAD BrowserENSG00000163286
Varsome BrowserALPG
Genomic Variants (DGV)ALPG [DGVbeta]
DECIPHERALPG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALPG 
Mutations
ICGC Data PortalALPG 
TCGA Data PortalALPG 
Broad Tumor PortalALPG
OASIS PortalALPG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALPG  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DALPG
Mutations and Diseases : HGMDALPG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALPG
DgiDB (Drug Gene Interaction Database)ALPG
DoCM (Curated mutations)ALPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALPG (select a term)
intoGenALPG
Cancer3DALPG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM171810   
Orphanet
DisGeNETALPG
MedgenALPG
Genetic Testing Registry ALPG
NextProtP10696 [Medical]
GENETestsALPG
Target ValidationALPG
Huge Navigator ALPG [HugePedia]
ClinGenALPG
Clinical trials, drugs, therapy
MyCancerGenomeALPG
Protein Interactions : CTD
Pharm GKB GenePA24731
PharosP10696
Clinical trialALPG
Miscellaneous
canSAR (ICR)ALPG (select the gene name)
HarmonizomeALPG
DataMed IndexALPG
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXALPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jan 1 18:05:12 CET 2021
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