Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ALPG (alkaline phosphatase, germ cell)

Identity

Alias_namesalkaline phosphatase
Other aliasALPPL
ALPPL2
GCAP
HGNC (Hugo) ALPG
LocusID (NCBI) 251
Atlas_Id 624
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 232406842 and ends at 232410714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ALPG   441
Cards
Entrez_Gene (NCBI)ALPG  251  alkaline phosphatase, germ cell
AliasesALPPL; ALPPL2; GCAP
GeneCards (Weizmann)ALPG
Ensembl hg19 (Hinxton)ENSG00000163286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163286 [Gene_View]  ENSG00000163286 [Sequence]  chr2:232406842-232410714 [Contig_View]  ALPG [Vega]
ICGC DataPortalENSG00000163286
TCGA cBioPortalALPG
AceView (NCBI)ALPG
Genatlas (Paris)ALPG
WikiGenes251
SOURCE (Princeton)ALPG
Genetics Home Reference (NIH)ALPG
Genomic and cartography
GoldenPath hg38 (UCSC)ALPG  -     chr2:232406842-232410714 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALPG  -     2q37.1   [Description]    (hg19-Feb_2009)
ALPG - 2q37.1 [CytoView hg19]  ALPG - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIALPG [Mapview hg19]  ALPG [Mapview hg38]
OMIM171810   
Gene and transcription
Genbank (Entrez)AB012642 AI982769 AK293017 BC014139 DB194270
RefSeq transcript (Entrez)NM_031313
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALPG
Cluster EST : UnigeneHs.333509 [ NCBI ]
CGAP (NCI)Hs.333509
Alternative Splicing GalleryENSG00000163286
Gene ExpressionALPG [ NCBI-GEO ]   ALPG [ EBI - ARRAY_EXPRESS ]   ALPG [ SEEK ]   ALPG [ MEM ]
Gene Expression Viewer (FireBrowse)ALPG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)251
GTEX Portal (Tissue expression)ALPG
Human Protein AtlasENSG00000163286-ALPG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10696   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10696  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10696
Splice isoforms : SwissVarP10696
Catalytic activity : Enzyme3.1.3.1 [ Enzyme-Expasy ]   3.1.3.13.1.3.1 [ IntEnz-EBI ]   3.1.3.1 [ BRENDA ]   3.1.3.1 [ KEGG ]   
PhosPhoSitePlusP10696
Domaine pattern : Prosite (Expaxy)ALKALINE_PHOSPHATASE (PS00123)   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase    Alkaline_phosphatase_AS    Alkaline_phosphatase_core_sf   
Domain families : Pfam (Sanger)Alk_phosphatase (PF00245)   
Domain families : Pfam (NCBI)pfam00245   
Domain families : Smart (EMBL)alkPPc (SM00098)  
Conserved Domain (NCBI)ALPG
DMDM Disease mutations251
Blocks (Seattle)ALPG
SuperfamilyP10696
Human Protein Atlas [tissue]ENSG00000163286-ALPG [tissue]
Peptide AtlasP10696
HPRD01380
IPIIPI00290380   
Protein Interaction databases
DIP (DOE-UCLA)P10696
IntAct (EBI)P10696
FunCoupENSG00000163286
BioGRIDALPG
STRING (EMBL)ALPG
ZODIACALPG
Ontologies - Pathways
QuickGOP10696
Ontology : AmiGOalkaline phosphatase activity  alkaline phosphatase activity  extracellular region  plasma membrane  plasma membrane  dephosphorylation  anchored component of membrane  metal ion binding  
Ontology : EGO-EBIalkaline phosphatase activity  alkaline phosphatase activity  extracellular region  plasma membrane  plasma membrane  dephosphorylation  anchored component of membrane  metal ion binding  
NDEx NetworkALPG
Atlas of Cancer Signalling NetworkALPG
Wikipedia pathwaysALPG
Orthology - Evolution
OrthoDB251
GeneTree (enSembl)ENSG00000163286
Phylogenetic Trees/Animal Genes : TreeFamALPG
HOGENOMP10696
Homologs : HomoloGeneALPG
Homology/Alignments : Family Browser (UCSC)ALPG
Gene fusions - Rearrangements
Fusion : QuiverALPG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALPG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALPG
dbVarALPG
ClinVarALPG
1000_GenomesALPG 
Exome Variant ServerALPG
ExAC (Exome Aggregation Consortium)ENSG00000163286
GNOMAD BrowserENSG00000163286
Varsome BrowserALPG
Genetic variants : HAPMAP251
Genomic Variants (DGV)ALPG [DGVbeta]
DECIPHERALPG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALPG 
Mutations
ICGC Data PortalALPG 
TCGA Data PortalALPG 
Broad Tumor PortalALPG
OASIS PortalALPG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDALPG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALPG
DgiDB (Drug Gene Interaction Database)ALPG
DoCM (Curated mutations)ALPG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALPG (select a term)
intoGenALPG
Cancer3DALPG(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM171810   
Orphanet
DisGeNETALPG
MedgenALPG
Genetic Testing Registry ALPG
NextProtP10696 [Medical]
TSGene251
GENETestsALPG
Target ValidationALPG
Huge Navigator ALPG [HugePedia]
snp3D : Map Gene to Disease251
BioCentury BCIQALPG
ClinGenALPG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD251
Chemical/Pharm GKB GenePA24731
Clinical trialALPG
Miscellaneous
canSAR (ICR)ALPG (select the gene name)
DataMed IndexALPG
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALPG
EVEXALPG
GoPubMedALPG
iHOPALPG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu May 2 12:39:00 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.