Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ALPI (alkaline phosphatase, intestinal)

Identity

Other aliasIAP
HGNC (Hugo) ALPI
LocusID (NCBI) 248
Atlas_Id 622
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 233320822 and ends at 233325455 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ALPI (2q37.1) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALPI   437
Cards
Entrez_Gene (NCBI)ALPI  248  alkaline phosphatase, intestinal
AliasesIAP
GeneCards (Weizmann)ALPI
Ensembl hg19 (Hinxton)ENSG00000163295 [Gene_View]  chr2:233320822-233325455 [Contig_View]  ALPI [Vega]
Ensembl hg38 (Hinxton)ENSG00000163295 [Gene_View]  chr2:233320822-233325455 [Contig_View]  ALPI [Vega]
ICGC DataPortalENSG00000163295
TCGA cBioPortalALPI
AceView (NCBI)ALPI
Genatlas (Paris)ALPI
WikiGenes248
SOURCE (Princeton)ALPI
Genetics Home Reference (NIH)ALPI
Genomic and cartography
GoldenPath hg19 (UCSC)ALPI  -     chr2:233320822-233325455 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALPI  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblALPI - 2q37.1 [CytoView hg19]  ALPI - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIALPI [Mapview hg19]  ALPI [Mapview hg38]
OMIM171740   
Gene and transcription
Genbank (Entrez)AA190871 AK313163 BC132678 DA376676 DA925041
RefSeq transcript (Entrez)NM_001631
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)ALPI
Cluster EST : UnigeneHs.37009 [ NCBI ]
CGAP (NCI)Hs.37009
Alternative Splicing GalleryENSG00000163295
Gene ExpressionALPI [ NCBI-GEO ]   ALPI [ EBI - ARRAY_EXPRESS ]   ALPI [ SEEK ]   ALPI [ MEM ]
Gene Expression Viewer (FireBrowse)ALPI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)248
GTEX Portal (Tissue expression)ALPI
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09923   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09923  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09923
Splice isoforms : SwissVarP09923
Catalytic activity : Enzyme3.1.3.1 [ Enzyme-Expasy ]   3.1.3.13.1.3.1 [ IntEnz-EBI ]   3.1.3.1 [ BRENDA ]   3.1.3.1 [ KEGG ]   
PhosPhoSitePlusP09923
Domaine pattern : Prosite (Expaxy)ALKALINE_PHOSPHATASE (PS00123)   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase    Alkaline_phosphatase_AS    Alkaline_phosphatase_core   
Domain families : Pfam (Sanger)Alk_phosphatase (PF00245)   
Domain families : Pfam (NCBI)pfam00245   
Domain families : Smart (EMBL)alkPPc (SM00098)  
Conserved Domain (NCBI)ALPI
DMDM Disease mutations248
Blocks (Seattle)ALPI
SuperfamilyP09923
Human Protein AtlasENSG00000163295
Peptide AtlasP09923
HPRD01376
IPIIPI00298622   IPI00917909   
Protein Interaction databases
DIP (DOE-UCLA)P09923
IntAct (EBI)P09923
FunCoupENSG00000163295
BioGRIDALPI
STRING (EMBL)ALPI
ZODIACALPI
Ontologies - Pathways
QuickGOP09923
Ontology : AmiGOmagnesium ion binding  protease binding  alkaline phosphatase activity  alkaline phosphatase activity  protein binding  plasma membrane  zinc ion binding  integral component of membrane  dephosphorylation  anchored component of membrane  
Ontology : EGO-EBImagnesium ion binding  protease binding  alkaline phosphatase activity  alkaline phosphatase activity  protein binding  plasma membrane  zinc ion binding  integral component of membrane  dephosphorylation  anchored component of membrane  
Pathways : KEGGFolate biosynthesis   
NDEx NetworkALPI
Atlas of Cancer Signalling NetworkALPI
Wikipedia pathwaysALPI
Orthology - Evolution
OrthoDB248
GeneTree (enSembl)ENSG00000163295
Phylogenetic Trees/Animal Genes : TreeFamALPI
HOVERGENP09923
HOGENOMP09923
Homologs : HomoloGeneALPI
Homology/Alignments : Family Browser (UCSC)ALPI
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALPI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALPI
dbVarALPI
ClinVarALPI
1000_GenomesALPI 
Exome Variant ServerALPI
ExAC (Exome Aggregation Consortium)ALPI (select the gene name)
Genetic variants : HAPMAP248
Genomic Variants (DGV)ALPI [DGVbeta]
DECIPHER (Syndromes)2:233320822-233325455  ENSG00000163295
CONAN: Copy Number AnalysisALPI 
Mutations
ICGC Data PortalALPI 
TCGA Data PortalALPI 
Broad Tumor PortalALPI
OASIS PortalALPI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALPI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALPI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALPI
DgiDB (Drug Gene Interaction Database)ALPI
DoCM (Curated mutations)ALPI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALPI (select a term)
intoGenALPI
Cancer3DALPI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM171740   
Orphanet
MedgenALPI
Genetic Testing Registry ALPI
NextProtP09923 [Medical]
TSGene248
GENETestsALPI
Huge Navigator ALPI [HugePedia]
snp3D : Map Gene to Disease248
BioCentury BCIQALPI
ClinGenALPI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD248
Chemical/Pharm GKB GenePA24728
Clinical trialALPI
Miscellaneous
canSAR (ICR)ALPI (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALPI
EVEXALPI
GoPubMedALPI
iHOPALPI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:55:37 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.