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ALS2CL (ALS2 C-terminal like)

Identity

Alias_symbol (synonym)FLJ36525
RN49018
DKFZp686I0110
Other alias
HGNC (Hugo) ALS2CL
LocusID (NCBI) 259173
Atlas_Id 52127
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46668995 and ends at 46693656 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBXL8 (16q22.1) / ALS2CL (3p21.31)ZNF589 (3p21.31) / ALS2CL (3p21.31)ZNF589 3p21.31 / ALS2CL 3p21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALS2CL   20605
Cards
Entrez_Gene (NCBI)ALS2CL  259173  ALS2 C-terminal like
AliasesRN49018
GeneCards (Weizmann)ALS2CL
Ensembl hg19 (Hinxton)ENSG00000178038 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178038 [Gene_View]  chr3:46668995-46693656 [Contig_View]  ALS2CL [Vega]
ICGC DataPortalENSG00000178038
TCGA cBioPortalALS2CL
AceView (NCBI)ALS2CL
Genatlas (Paris)ALS2CL
WikiGenes259173
SOURCE (Princeton)ALS2CL
Genetics Home Reference (NIH)ALS2CL
Genomic and cartography
GoldenPath hg38 (UCSC)ALS2CL  -     chr3:46668995-46693656 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ALS2CL  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblALS2CL - 3p21.31 [CytoView hg19]  ALS2CL - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIALS2CL [Mapview hg19]  ALS2CL [Mapview hg38]
OMIM612402   
Gene and transcription
Genbank (Entrez)AB107015 AK074118 AK092455 AK093844 AK096091
RefSeq transcript (Entrez)NM_001190707 NM_147129 NM_182775
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ALS2CL
Cluster EST : UnigeneHs.517937 [ NCBI ]
CGAP (NCI)Hs.517937
Alternative Splicing GalleryENSG00000178038
Gene ExpressionALS2CL [ NCBI-GEO ]   ALS2CL [ EBI - ARRAY_EXPRESS ]   ALS2CL [ SEEK ]   ALS2CL [ MEM ]
Gene Expression Viewer (FireBrowse)ALS2CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259173
GTEX Portal (Tissue expression)ALS2CL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ60I27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ60I27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ60I27
Splice isoforms : SwissVarQ60I27
PhosPhoSitePlusQ60I27
Domaine pattern : Prosite (Expaxy)VPS9 (PS51205)   
Domains : Interpro (EBI)DH-domain    MORN    VPS9   
Domain families : Pfam (Sanger)MORN (PF02493)    VPS9 (PF02204)   
Domain families : Pfam (NCBI)pfam02493    pfam02204   
Domain families : Smart (EMBL)MORN (SM00698)  
Conserved Domain (NCBI)ALS2CL
DMDM Disease mutations259173
Blocks (Seattle)ALS2CL
SuperfamilyQ60I27
Human Protein AtlasENSG00000178038
Peptide AtlasQ60I27
HPRD10643
IPIIPI00418601   IPI00879941   IPI00879806   IPI00445149   IPI00645050   IPI00920962   IPI00924979   IPI00794711   IPI00927059   IPI00927770   IPI00329369   
Protein Interaction databases
DIP (DOE-UCLA)Q60I27
IntAct (EBI)Q60I27
FunCoupENSG00000178038
BioGRIDALS2CL
STRING (EMBL)ALS2CL
ZODIACALS2CL
Ontologies - Pathways
QuickGOQ60I27
Ontology : AmiGORho guanyl-nucleotide exchange factor activity  GTPase activator activity  cytosol  endosome organization  Rab guanyl-nucleotide exchange factor activity  regulation of Rho protein signal transduction  identical protein binding  positive regulation of GTPase activity  membrane organization  
Ontology : EGO-EBIRho guanyl-nucleotide exchange factor activity  GTPase activator activity  cytosol  endosome organization  Rab guanyl-nucleotide exchange factor activity  regulation of Rho protein signal transduction  identical protein binding  positive regulation of GTPase activity  membrane organization  
NDEx NetworkALS2CL
Atlas of Cancer Signalling NetworkALS2CL
Wikipedia pathwaysALS2CL
Orthology - Evolution
OrthoDB259173
GeneTree (enSembl)ENSG00000178038
Phylogenetic Trees/Animal Genes : TreeFamALS2CL
HOVERGENQ60I27
HOGENOMQ60I27
Homologs : HomoloGeneALS2CL
Homology/Alignments : Family Browser (UCSC)ALS2CL
Gene fusions - Rearrangements
Fusion : MitelmanZNF589/ALS2CL [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Fusion: TCGAZNF589 3p21.31 ALS2CL 3p21.31 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALS2CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALS2CL
dbVarALS2CL
ClinVarALS2CL
1000_GenomesALS2CL 
Exome Variant ServerALS2CL
ExAC (Exome Aggregation Consortium)ALS2CL (select the gene name)
Genetic variants : HAPMAP259173
Genomic Variants (DGV)ALS2CL [DGVbeta]
DECIPHERALS2CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisALS2CL 
Mutations
ICGC Data PortalALS2CL 
TCGA Data PortalALS2CL 
Broad Tumor PortalALS2CL
OASIS PortalALS2CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALS2CL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALS2CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALS2CL
DgiDB (Drug Gene Interaction Database)ALS2CL
DoCM (Curated mutations)ALS2CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALS2CL (select a term)
intoGenALS2CL
Cancer3DALS2CL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612402   
Orphanet
MedgenALS2CL
Genetic Testing Registry ALS2CL
NextProtQ60I27 [Medical]
TSGene259173
GENETestsALS2CL
Target ValidationALS2CL
Huge Navigator ALS2CL [HugePedia]
snp3D : Map Gene to Disease259173
BioCentury BCIQALS2CL
ClinGenALS2CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259173
Chemical/Pharm GKB GenePA134949717
Clinical trialALS2CL
Miscellaneous
canSAR (ICR)ALS2CL (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALS2CL
EVEXALS2CL
GoPubMedALS2CL
iHOPALS2CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:54:52 CEST 2017

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