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ALS2CR11 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11)

Identity

Alias_namesamyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11
Alias_symbol (synonym)FLJ25351
Other alias-
HGNC (Hugo) ALS2CR11
LocusID (NCBI) 151254
Atlas_Id 60267
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 202352144 and ends at 202483905 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ALS2CR11   14438
Cards
Entrez_Gene (NCBI)ALS2CR11  151254  amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11
Aliases
GeneCards (Weizmann)ALS2CR11
Ensembl hg19 (Hinxton)ENSG00000155754 [Gene_View]  chr2:202352144-202483905 [Contig_View]  ALS2CR11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155754 [Gene_View]  chr2:202352144-202483905 [Contig_View]  ALS2CR11 [Vega]
ICGC DataPortalENSG00000155754
TCGA cBioPortalALS2CR11
AceView (NCBI)ALS2CR11
Genatlas (Paris)ALS2CR11
WikiGenes151254
SOURCE (Princeton)ALS2CR11
Genetics Home Reference (NIH)ALS2CR11
Genomic and cartography
GoldenPath hg19 (UCSC)ALS2CR11  -     chr2:202352144-202483905 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ALS2CR11  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblALS2CR11 - 2q33.1 [CytoView hg19]  ALS2CR11 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBIALS2CR11 [Mapview hg19]  ALS2CR11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB053313 AI754862 AK058080 AK097651 AL833429
RefSeq transcript (Entrez)NM_001168216 NM_001168217 NM_001168221 NM_152525
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)ALS2CR11
Cluster EST : UnigeneHs.335788 [ NCBI ]
CGAP (NCI)Hs.335788
Alternative Splicing GalleryENSG00000155754
Gene ExpressionALS2CR11 [ NCBI-GEO ]   ALS2CR11 [ EBI - ARRAY_EXPRESS ]   ALS2CR11 [ SEEK ]   ALS2CR11 [ MEM ]
Gene Expression Viewer (FireBrowse)ALS2CR11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151254
GTEX Portal (Tissue expression)ALS2CR11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53TS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53TS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53TS8
Splice isoforms : SwissVarQ53TS8
PhosPhoSitePlusQ53TS8
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ALS2CR11
DMDM Disease mutations151254
Blocks (Seattle)ALS2CR11
SuperfamilyQ53TS8
Human Protein AtlasENSG00000155754
Peptide AtlasQ53TS8
HPRD08687
IPIIPI00301617   IPI00044667   IPI00384662   IPI00927232   
Protein Interaction databases
DIP (DOE-UCLA)Q53TS8
IntAct (EBI)Q53TS8
FunCoupENSG00000155754
BioGRIDALS2CR11
STRING (EMBL)ALS2CR11
ZODIACALS2CR11
Ontologies - Pathways
QuickGOQ53TS8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkALS2CR11
Atlas of Cancer Signalling NetworkALS2CR11
Wikipedia pathwaysALS2CR11
Orthology - Evolution
OrthoDB151254
GeneTree (enSembl)ENSG00000155754
Phylogenetic Trees/Animal Genes : TreeFamALS2CR11
HOVERGENQ53TS8
HOGENOMQ53TS8
Homologs : HomoloGeneALS2CR11
Homology/Alignments : Family Browser (UCSC)ALS2CR11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerALS2CR11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ALS2CR11
dbVarALS2CR11
ClinVarALS2CR11
1000_GenomesALS2CR11 
Exome Variant ServerALS2CR11
ExAC (Exome Aggregation Consortium)ALS2CR11 (select the gene name)
Genetic variants : HAPMAP151254
Genomic Variants (DGV)ALS2CR11 [DGVbeta]
DECIPHER (Syndromes)2:202352144-202483905  ENSG00000155754
CONAN: Copy Number AnalysisALS2CR11 
Mutations
ICGC Data PortalALS2CR11 
TCGA Data PortalALS2CR11 
Broad Tumor PortalALS2CR11
OASIS PortalALS2CR11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICALS2CR11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDALS2CR11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ALS2CR11
DgiDB (Drug Gene Interaction Database)ALS2CR11
DoCM (Curated mutations)ALS2CR11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ALS2CR11 (select a term)
intoGenALS2CR11
Cancer3DALS2CR11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenALS2CR11
Genetic Testing Registry ALS2CR11
NextProtQ53TS8 [Medical]
TSGene151254
GENETestsALS2CR11
Huge Navigator ALS2CR11 [HugePedia]
snp3D : Map Gene to Disease151254
BioCentury BCIQALS2CR11
ClinGenALS2CR11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151254
Chemical/Pharm GKB GenePA24734
Clinical trialALS2CR11
Miscellaneous
canSAR (ICR)ALS2CR11 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineALS2CR11
EVEXALS2CR11
GoPubMedALS2CR11
iHOPALS2CR11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:09 CET 2017

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