Atlas of Genetics and Cytogenetics in Oncology and Haematology


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AMACR (alpha-methylacyl-CoA racemase)

Identity

Other namesAMACRD
CBAS4
RACE
RM
HGNC (Hugo) AMACR
LocusID (NCBI) 23600
Location 5p13.2
Location_base_pair Starts at 33987091 and ends at 34008220 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AMACR   451
Cards
Entrez_Gene (NCBI)AMACR  23600  alpha-methylacyl-CoA racemase
GeneCards (Weizmann)AMACR
Ensembl (Hinxton)ENSG00000242110 [Gene_View]  chr5:33987091-34008220 [Contig_View]  AMACR [Vega]
ICGC DataPortalENSG00000242110
cBioPortalAMACR
AceView (NCBI)AMACR
Genatlas (Paris)AMACR
WikiGenes23600
SOURCE (Princeton)NM_001167595 NM_001167596 NM_001167597 NM_001167598 NM_014324 NM_203382
Genomic and cartography
GoldenPath (UCSC)AMACR  -  5p13.2   chr5:33987091-34008220 -  5p13.2   [Description]    (hg19-Feb_2009)
EnsemblAMACR - 5p13.2 [CytoView]
Mapping of homologs : NCBIAMACR [Mapview]
OMIM214950   604489   614307   
Gene and transcription
Genbank (Entrez)AA969512 AF047020 AF158378 AJ130733 AK000912
RefSeq transcript (Entrez)NM_001167595 NM_001167596 NM_001167597 NM_001167598 NM_014324 NM_203382
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NG_016211 NT_006576 NW_001838929 NW_004929321
Consensus coding sequences : CCDS (NCBI)AMACR
Cluster EST : UnigeneHs.508343 [ NCBI ]
CGAP (NCI)Hs.508343
Alternative Splicing : Fast-db (Paris)GSHG0024706
Alternative Splicing GalleryENSG00000242110
Gene ExpressionAMACR [ NCBI-GEO ]     AMACR [ SEEK ]   AMACR [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHK6 (Uniprot)
NextProtQ9UHK6  [Medical]
With graphics : InterProQ9UHK6
Splice isoforms : SwissVarQ9UHK6 (Swissvar)
Catalytic activity : Enzyme5.1.99.4 [ Enzyme-Expasy ]   5.1.99.45.1.99.4 [ IntEnz-EBI ]   5.1.99.4 [ BRENDA ]   5.1.99.4 [ KEGG ]   
Domains : Interpro (EBI)CoA-Trfase_fam_III [organisation]   CoA-Trfase_III_dom [organisation]  
Related proteins : CluSTrQ9UHK6
Domain families : Pfam (Sanger)CoA_transf_3 (PF02515)   
Domain families : Pfam (NCBI)pfam02515   
DMDM Disease mutations23600
Blocks (Seattle)Q9UHK6
Human Protein AtlasENSG00000242110 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9UHK6
HPRD05134
IPIIPI00914928   IPI00930713   IPI00930327   IPI01017887   IPI00964368   IPI00005918   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHK6
IntAct (EBI)Q9UHK6
FunCoupENSG00000242110
BioGRIDAMACR
InParanoidQ9UHK6
Interologous Interaction database Q9UHK6
IntegromeDBAMACR
STRING (EMBL)AMACR
Ontologies - Pathways
Ontology : AmiGOreceptor binding  cytoplasm  mitochondrion  peroxisome  peroxisomal matrix  bile acid biosynthetic process  bile acid biosynthetic process  alpha-methylacyl-CoA racemase activity  alpha-methylacyl-CoA racemase activity  bile acid metabolic process  bile acid metabolic process  fatty acid beta-oxidation using acyl-CoA oxidase  cellular lipid metabolic process  small molecule metabolic process  
Ontology : EGO-EBIreceptor binding  cytoplasm  mitochondrion  peroxisome  peroxisomal matrix  bile acid biosynthetic process  bile acid biosynthetic process  alpha-methylacyl-CoA racemase activity  alpha-methylacyl-CoA racemase activity  bile acid metabolic process  bile acid metabolic process  fatty acid beta-oxidation using acyl-CoA oxidase  cellular lipid metabolic process  small molecule metabolic process  
Pathways : KEGGPrimary bile acid biosynthesis    Peroxisome   
Protein Interaction DatabaseAMACR
Wikipedia pathwaysAMACR
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AMACR
snp3D : Map Gene to Disease23600
SNP (GeneSNP Utah)AMACR
SNP : HGBaseAMACR
Genetic variants : HAPMAPAMACR
Exome VariantAMACR
1000_GenomesAMACR 
ICGC programENSG00000242110 
Somatic Mutations in Cancer : COSMICAMACR 
CONAN: Copy Number AnalysisAMACR 
Mutations and Diseases : HGMDAMACR
Mutations and Diseases : intOGenAMACR
Genomic VariantsAMACR  AMACR [DGVbeta]
dbVarAMACR
ClinVarAMACR
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM214950    604489    614307   
MedgenAMACR
GENETestsAMACR
Disease Genetic AssociationAMACR
Huge Navigator AMACR [HugePedia]  AMACR [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneAMACR
Homology/Alignments : Family Browser (UCSC)AMACR
Phylogenetic Trees/Animal Genes : TreeFamAMACR
Chemical/Protein Interactions : CTD23600
Chemical/Pharm GKB GenePA24757
Clinical trialAMACR
Cancer Resource (Charite)ENSG00000242110
Other databases
Probes
Litterature
PubMed91 Pubmed reference(s) in Entrez
CoreMineAMACR
iHOPAMACR
OncoSearchAMACR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:37:56 CEST 2014

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