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AMDHD2 (amidohydrolase domain containing 2)

Identity

Alias_symbol (synonym)CGI-14
Other alias
HGNC (Hugo) AMDHD2
LocusID (NCBI) 51005
Atlas_Id 60270
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2520362 and ends at 2530954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMDHD2 (16p13.3) / ATP6V0C (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMDHD2   24262
Cards
Entrez_Gene (NCBI)AMDHD2  51005  amidohydrolase domain containing 2
AliasesCGI-14
GeneCards (Weizmann)AMDHD2
Ensembl hg19 (Hinxton)ENSG00000162066 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162066 [Gene_View]  chr16:2520362-2530954 [Contig_View]  AMDHD2 [Vega]
ICGC DataPortalENSG00000162066
TCGA cBioPortalAMDHD2
AceView (NCBI)AMDHD2
Genatlas (Paris)AMDHD2
WikiGenes51005
SOURCE (Princeton)AMDHD2
Genetics Home Reference (NIH)AMDHD2
Genomic and cartography
GoldenPath hg38 (UCSC)AMDHD2  -     chr16:2520362-2530954 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMDHD2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblAMDHD2 - 16p13.3 [CytoView hg19]  AMDHD2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIAMDHD2 [Mapview hg19]  AMDHD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209351 AF132948 AK296877 AK300747 BC018734
RefSeq transcript (Entrez)NM_001145815 NM_001330449 NM_015944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMDHD2
Cluster EST : UnigeneHs.740430 [ NCBI ]
CGAP (NCI)Hs.740430
Alternative Splicing GalleryENSG00000162066
Gene ExpressionAMDHD2 [ NCBI-GEO ]   AMDHD2 [ EBI - ARRAY_EXPRESS ]   AMDHD2 [ SEEK ]   AMDHD2 [ MEM ]
Gene Expression Viewer (FireBrowse)AMDHD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51005
GTEX Portal (Tissue expression)AMDHD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y303   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y303  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y303
Splice isoforms : SwissVarQ9Y303
PhosPhoSitePlusQ9Y303
Domains : Interpro (EBI)Amidohydro-rel    GlcNAc_6-P_deAcase    Metal-dep_hydrolase_composite    Metal_Hydrolase   
Domain families : Pfam (Sanger)Amidohydro_1 (PF01979)   
Domain families : Pfam (NCBI)pfam01979   
Conserved Domain (NCBI)AMDHD2
DMDM Disease mutations51005
Blocks (Seattle)AMDHD2
SuperfamilyQ9Y303
Human Protein AtlasENSG00000162066
Peptide AtlasQ9Y303
HPRD13034
IPIIPI00477702   IPI00103028   IPI00925719   IPI00555653   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y303
IntAct (EBI)Q9Y303
FunCoupENSG00000162066
BioGRIDAMDHD2
STRING (EMBL)AMDHD2
ZODIACAMDHD2
Ontologies - Pathways
QuickGOQ9Y303
Ontology : AmiGOprotein binding  nucleus  cytosol  carbohydrate metabolic process  N-acetylglucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  N-acetylglucosamine-6-phosphate deacetylase activity  N-acetylglucosamine-6-phosphate deacetylase activity  N-acetylneuraminate catabolic process  N-acetylneuraminate catabolic process  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  cytosol  carbohydrate metabolic process  N-acetylglucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  N-acetylglucosamine-6-phosphate deacetylase activity  N-acetylglucosamine-6-phosphate deacetylase activity  N-acetylneuraminate catabolic process  N-acetylneuraminate catabolic process  metal ion binding  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkAMDHD2
Atlas of Cancer Signalling NetworkAMDHD2
Wikipedia pathwaysAMDHD2
Orthology - Evolution
OrthoDB51005
GeneTree (enSembl)ENSG00000162066
Phylogenetic Trees/Animal Genes : TreeFamAMDHD2
HOVERGENQ9Y303
HOGENOMQ9Y303
Homologs : HomoloGeneAMDHD2
Homology/Alignments : Family Browser (UCSC)AMDHD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMDHD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMDHD2
dbVarAMDHD2
ClinVarAMDHD2
1000_GenomesAMDHD2 
Exome Variant ServerAMDHD2
ExAC (Exome Aggregation Consortium)AMDHD2 (select the gene name)
Genetic variants : HAPMAP51005
Genomic Variants (DGV)AMDHD2 [DGVbeta]
DECIPHERAMDHD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMDHD2 
Mutations
ICGC Data PortalAMDHD2 
TCGA Data PortalAMDHD2 
Broad Tumor PortalAMDHD2
OASIS PortalAMDHD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMDHD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMDHD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMDHD2
DgiDB (Drug Gene Interaction Database)AMDHD2
DoCM (Curated mutations)AMDHD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMDHD2 (select a term)
intoGenAMDHD2
Cancer3DAMDHD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAMDHD2
Genetic Testing Registry AMDHD2
NextProtQ9Y303 [Medical]
TSGene51005
GENETestsAMDHD2
Target ValidationAMDHD2
Huge Navigator AMDHD2 [HugePedia]
snp3D : Map Gene to Disease51005
BioCentury BCIQAMDHD2
ClinGenAMDHD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51005
Chemical/Pharm GKB GenePA143485298
Clinical trialAMDHD2
Miscellaneous
canSAR (ICR)AMDHD2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMDHD2
EVEXAMDHD2
GoPubMedAMDHD2
iHOPAMDHD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:58 CEST 2017

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