Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AMELY (amelogenin, Y-linked)

Identity

Alias_namesAMGL
amelogenin (Y chromosome)
Other aliasAMGY
HGNC (Hugo) AMELY
LocusID (NCBI) 266
Atlas_Id 60271
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 6865918 and ends at 6874027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMELY   462
Cards
Entrez_Gene (NCBI)AMELY  266  amelogenin, Y-linked
AliasesAMGL; AMGY
GeneCards (Weizmann)AMELY
Ensembl hg19 (Hinxton)ENSG00000099721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099721 [Gene_View]  chrY:6865918-6874027 [Contig_View]  AMELY [Vega]
ICGC DataPortalENSG00000099721
TCGA cBioPortalAMELY
AceView (NCBI)AMELY
Genatlas (Paris)AMELY
WikiGenes266
SOURCE (Princeton)AMELY
Genetics Home Reference (NIH)AMELY
Genomic and cartography
GoldenPath hg38 (UCSC)AMELY  -     chrY:6865918-6874027 -  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMELY  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblAMELY - Yp11.2 [CytoView hg19]  AMELY - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBIAMELY [Mapview hg19]  AMELY [Mapview hg38]
OMIM410000   
Gene and transcription
Genbank (Entrez)AY487421 BC069138 BC074976 BC074977 M86933
RefSeq transcript (Entrez)NM_001143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMELY
Cluster EST : UnigeneHs.1238 [ NCBI ]
CGAP (NCI)Hs.1238
Alternative Splicing GalleryENSG00000099721
Gene ExpressionAMELY [ NCBI-GEO ]   AMELY [ EBI - ARRAY_EXPRESS ]   AMELY [ SEEK ]   AMELY [ MEM ]
Gene Expression Viewer (FireBrowse)AMELY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)266
GTEX Portal (Tissue expression)AMELY
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99218   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99218  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99218
Splice isoforms : SwissVarQ99218
PhosPhoSitePlusQ99218
Domains : Interpro (EBI)Amelogenin   
Domain families : Pfam (Sanger)Amelogenin (PF02948)   
Domain families : Pfam (NCBI)pfam02948   
Domain families : Smart (EMBL)Amelogenin (SM00818)  
Conserved Domain (NCBI)AMELY
DMDM Disease mutations266
Blocks (Seattle)AMELY
SuperfamilyQ99218
Human Protein AtlasENSG00000099721
Peptide AtlasQ99218
HPRD02462
IPIIPI00450003   IPI00647871   
Protein Interaction databases
DIP (DOE-UCLA)Q99218
IntAct (EBI)Q99218
FunCoupENSG00000099721
BioGRIDAMELY
STRING (EMBL)AMELY
ZODIACAMELY
Ontologies - Pathways
QuickGOQ99218
Ontology : AmiGOproteinaceous extracellular matrix  structural constituent of tooth enamel  extracellular matrix  tooth mineralization  
Ontology : EGO-EBIproteinaceous extracellular matrix  structural constituent of tooth enamel  extracellular matrix  tooth mineralization  
NDEx NetworkAMELY
Atlas of Cancer Signalling NetworkAMELY
Wikipedia pathwaysAMELY
Orthology - Evolution
OrthoDB266
GeneTree (enSembl)ENSG00000099721
Phylogenetic Trees/Animal Genes : TreeFamAMELY
HOVERGENQ99218
HOGENOMQ99218
Homologs : HomoloGeneAMELY
Homology/Alignments : Family Browser (UCSC)AMELY
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMELY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMELY
dbVarAMELY
ClinVarAMELY
1000_GenomesAMELY 
Exome Variant ServerAMELY
ExAC (Exome Aggregation Consortium)AMELY (select the gene name)
Genetic variants : HAPMAP266
Genomic Variants (DGV)AMELY [DGVbeta]
DECIPHERAMELY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMELY 
Mutations
ICGC Data PortalAMELY 
TCGA Data PortalAMELY 
Broad Tumor PortalAMELY
OASIS PortalAMELY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMELY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMELY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMELY
DgiDB (Drug Gene Interaction Database)AMELY
DoCM (Curated mutations)AMELY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMELY (select a term)
intoGenAMELY
Cancer3DAMELY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM410000   
Orphanet
MedgenAMELY
Genetic Testing Registry AMELY
NextProtQ99218 [Medical]
TSGene266
GENETestsAMELY
Huge Navigator AMELY [HugePedia]
snp3D : Map Gene to Disease266
BioCentury BCIQAMELY
ClinGenAMELY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD266
Chemical/Pharm GKB GenePA24767
Clinical trialAMELY
Miscellaneous
canSAR (ICR)AMELY (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMELY
EVEXAMELY
GoPubMedAMELY
iHOPAMELY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 10:59:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.