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AMER2 (APC membrane recruitment protein 2)

Identity

Alias_namesFAM123A
family with sequence similarity 123A
Alias_symbol (synonym)FLJ25477
Other alias
HGNC (Hugo) AMER2
LocusID (NCBI) 219287
Atlas_Id 60272
Location 13q12.13  [Link to chromosome band 13q12]
Location_base_pair Starts at 25161679 and ends at 25172283 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMER2   26360
Cards
Entrez_Gene (NCBI)AMER2  219287  APC membrane recruitment protein 2
AliasesFAM123A
GeneCards (Weizmann)AMER2
Ensembl hg19 (Hinxton)ENSG00000165566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165566 [Gene_View]  chr13:25161679-25172283 [Contig_View]  AMER2 [Vega]
ICGC DataPortalENSG00000165566
TCGA cBioPortalAMER2
AceView (NCBI)AMER2
Genatlas (Paris)AMER2
WikiGenes219287
SOURCE (Princeton)AMER2
Genetics Home Reference (NIH)AMER2
Genomic and cartography
GoldenPath hg38 (UCSC)AMER2  -     chr13:25161679-25172283 -  13q12.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMER2  -     13q12.13   [Description]    (hg19-Feb_2009)
EnsemblAMER2 - 13q12.13 [CytoView hg19]  AMER2 - 13q12.13 [CytoView hg38]
Mapping of homologs : NCBIAMER2 [Mapview hg19]  AMER2 [Mapview hg38]
OMIM614659   
Gene and transcription
Genbank (Entrez)AK055049 AK055278 AK094378 AK098054 AK098343
RefSeq transcript (Entrez)NM_152704 NM_199138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMER2
Cluster EST : UnigeneHs.731897 [ NCBI ]
CGAP (NCI)Hs.731897
Alternative Splicing GalleryENSG00000165566
Gene ExpressionAMER2 [ NCBI-GEO ]   AMER2 [ EBI - ARRAY_EXPRESS ]   AMER2 [ SEEK ]   AMER2 [ MEM ]
Gene Expression Viewer (FireBrowse)AMER2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219287
GTEX Portal (Tissue expression)AMER2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7J2
Splice isoforms : SwissVarQ8N7J2
PhosPhoSitePlusQ8N7J2
Domains : Interpro (EBI)Uncharacterised_FAM123   
Domain families : Pfam (Sanger)WTX (PF09422)   
Domain families : Pfam (NCBI)pfam09422   
Conserved Domain (NCBI)AMER2
DMDM Disease mutations219287
Blocks (Seattle)AMER2
SuperfamilyQ8N7J2
Human Protein AtlasENSG00000165566
Peptide AtlasQ8N7J2
HPRD08067
IPIIPI00384608   IPI00167222   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7J2
IntAct (EBI)Q8N7J2
FunCoupENSG00000165566
BioGRIDAMER2
STRING (EMBL)AMER2
ZODIACAMER2
Ontologies - Pathways
QuickGOQ8N7J2
Ontology : AmiGOprotein binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  ectoderm development  beta-catenin binding  Wnt signaling pathway  anatomical structure development  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIprotein binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  ectoderm development  beta-catenin binding  Wnt signaling pathway  anatomical structure development  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkAMER2
Atlas of Cancer Signalling NetworkAMER2
Wikipedia pathwaysAMER2
Orthology - Evolution
OrthoDB219287
GeneTree (enSembl)ENSG00000165566
Phylogenetic Trees/Animal Genes : TreeFamAMER2
HOVERGENQ8N7J2
HOGENOMQ8N7J2
Homologs : HomoloGeneAMER2
Homology/Alignments : Family Browser (UCSC)AMER2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMER2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMER2
dbVarAMER2
ClinVarAMER2
1000_GenomesAMER2 
Exome Variant ServerAMER2
ExAC (Exome Aggregation Consortium)AMER2 (select the gene name)
Genetic variants : HAPMAP219287
Genomic Variants (DGV)AMER2 [DGVbeta]
DECIPHERAMER2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMER2 
Mutations
ICGC Data PortalAMER2 
TCGA Data PortalAMER2 
Broad Tumor PortalAMER2
OASIS PortalAMER2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAMER2
BioMutasearch AMER2
DgiDB (Drug Gene Interaction Database)AMER2
DoCM (Curated mutations)AMER2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMER2 (select a term)
intoGenAMER2
Cancer3DAMER2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614659   
Orphanet
MedgenAMER2
Genetic Testing Registry AMER2
NextProtQ8N7J2 [Medical]
TSGene219287
GENETestsAMER2
Target ValidationAMER2
Huge Navigator AMER2 [HugePedia]
snp3D : Map Gene to Disease219287
BioCentury BCIQAMER2
ClinGenAMER2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219287
Chemical/Pharm GKB GenePA145148898
Clinical trialAMER2
Miscellaneous
canSAR (ICR)AMER2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMER2
EVEXAMER2
GoPubMedAMER2
iHOPAMER2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:13 CEST 2017

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