Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AMER3 (APC membrane recruitment protein 3)

Identity

Alias_namesFAM123C
family with sequence similarity 123C
Alias_symbol (synonym)FLJ38377
Other alias
HGNC (Hugo) AMER3
LocusID (NCBI) 205147
Atlas_Id 53868
Location 2q21.1  [Link to chromosome band 2q21]
Location_base_pair Starts at 130755651 and ends at 130768134 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMER3   26771
Cards
Entrez_Gene (NCBI)AMER3  205147  APC membrane recruitment protein 3
AliasesFAM123C
GeneCards (Weizmann)AMER3
Ensembl hg19 (Hinxton)ENSG00000178171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178171 [Gene_View]  chr2:130755651-130768134 [Contig_View]  AMER3 [Vega]
ICGC DataPortalENSG00000178171
TCGA cBioPortalAMER3
AceView (NCBI)AMER3
Genatlas (Paris)AMER3
WikiGenes205147
SOURCE (Princeton)AMER3
Genetics Home Reference (NIH)AMER3
Genomic and cartography
GoldenPath hg38 (UCSC)AMER3  -     chr2:130755651-130768134 +  2q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMER3  -     2q21.1   [Description]    (hg19-Feb_2009)
EnsemblAMER3 - 2q21.1 [CytoView hg19]  AMER3 - 2q21.1 [CytoView hg38]
Mapping of homologs : NCBIAMER3 [Mapview hg19]  AMER3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095696 AK289525 AK291424 BC025667 BC113445
RefSeq transcript (Entrez)NM_001105193 NM_001105194 NM_001105195 NM_152698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMER3
Cluster EST : UnigeneHs.369289 [ NCBI ]
CGAP (NCI)Hs.369289
Alternative Splicing GalleryENSG00000178171
Gene ExpressionAMER3 [ NCBI-GEO ]   AMER3 [ EBI - ARRAY_EXPRESS ]   AMER3 [ SEEK ]   AMER3 [ MEM ]
Gene Expression Viewer (FireBrowse)AMER3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)205147
GTEX Portal (Tissue expression)AMER3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N944   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N944  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N944
Splice isoforms : SwissVarQ8N944
PhosPhoSitePlusQ8N944
Domains : Interpro (EBI)Uncharacterised_FAM123   
Domain families : Pfam (Sanger)WTX (PF09422)   
Domain families : Pfam (NCBI)pfam09422   
Conserved Domain (NCBI)AMER3
DMDM Disease mutations205147
Blocks (Seattle)AMER3
SuperfamilyQ8N944
Human Protein AtlasENSG00000178171
Peptide AtlasQ8N944
HPRD08241
IPIIPI00175311   IPI00916726   IPI00915754   
Protein Interaction databases
DIP (DOE-UCLA)Q8N944
IntAct (EBI)Q8N944
FunCoupENSG00000178171
BioGRIDAMER3
STRING (EMBL)AMER3
ZODIACAMER3
Ontologies - Pathways
QuickGOQ8N944
Ontology : AmiGOprotein binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  beta-catenin binding  Wnt signaling pathway  anatomical structure development  regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIprotein binding  phosphatidylinositol-4,5-bisphosphate binding  plasma membrane  beta-catenin binding  Wnt signaling pathway  anatomical structure development  regulation of canonical Wnt signaling pathway  
NDEx NetworkAMER3
Atlas of Cancer Signalling NetworkAMER3
Wikipedia pathwaysAMER3
Orthology - Evolution
OrthoDB205147
GeneTree (enSembl)ENSG00000178171
Phylogenetic Trees/Animal Genes : TreeFamAMER3
HOVERGENQ8N944
HOGENOMQ8N944
Homologs : HomoloGeneAMER3
Homology/Alignments : Family Browser (UCSC)AMER3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMER3
dbVarAMER3
ClinVarAMER3
1000_GenomesAMER3 
Exome Variant ServerAMER3
ExAC (Exome Aggregation Consortium)AMER3 (select the gene name)
Genetic variants : HAPMAP205147
Genomic Variants (DGV)AMER3 [DGVbeta]
DECIPHERAMER3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMER3 
Mutations
ICGC Data PortalAMER3 
TCGA Data PortalAMER3 
Broad Tumor PortalAMER3
OASIS PortalAMER3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAMER3
BioMutasearch AMER3
DgiDB (Drug Gene Interaction Database)AMER3
DoCM (Curated mutations)AMER3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMER3 (select a term)
intoGenAMER3
Cancer3DAMER3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAMER3
Genetic Testing Registry AMER3
NextProtQ8N944 [Medical]
TSGene205147
GENETestsAMER3
Target ValidationAMER3
Huge Navigator AMER3 [HugePedia]
snp3D : Map Gene to Disease205147
BioCentury BCIQAMER3
ClinGenAMER3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD205147
Chemical/Pharm GKB GenePA162385791
Clinical trialAMER3
Miscellaneous
canSAR (ICR)AMER3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMER3
EVEXAMER3
GoPubMedAMER3
iHOPAMER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:54:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.