Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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AMH (anti-Mullerian hormone)

Identity

Other namesMIF
MIS
HGNC (Hugo) AMH
LocusID (NCBI) 268
Location 19p13.3
Location_base_pair Starts at 2249113 and ends at 2252072 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AMH   464
Cards
Entrez_Gene (NCBI)AMH  268  anti-Mullerian hormone
GeneCards (Weizmann)AMH
Ensembl hg19 (Hinxton)ENSG00000104899 [Gene_View]  chr19:2249113-2252072 [Contig_View]  AMH [Vega]
Ensembl hg38 (Hinxton)ENSG00000104899 [Gene_View]  chr19:2249113-2252072 [Contig_View]  AMH [Vega]
ICGC DataPortalENSG00000104899
cBioPortalAMH
AceView (NCBI)AMH
Genatlas (Paris)AMH
WikiGenes268
SOURCE (Princeton)AMH
Genomic and cartography
GoldenPath hg19 (UCSC)AMH  -     chr19:2249113-2252072 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AMH  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblAMH - 19p13.3 [CytoView hg19]  AMH - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIAMH [Mapview hg19]  AMH [Mapview hg38]
OMIM261550   600957   
Gene and transcription
Genbank (Entrez)AI791949 BC033218 BC049194
RefSeq transcript (Entrez)NM_000479
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NG_012190 NT_011295 NW_001838476 NW_004929412
Consensus coding sequences : CCDS (NCBI)AMH
Cluster EST : UnigeneHs.112432 [ NCBI ]
CGAP (NCI)Hs.112432
Alternative Splicing : Fast-db (Paris)GSHG0014444
Alternative Splicing GalleryENSG00000104899
Gene ExpressionAMH [ NCBI-GEO ]     AMH [ SEEK ]   AMH [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP03971 (Uniprot)
NextProtP03971  [Medical]
With graphics : InterProP03971
Splice isoforms : SwissVarP03971 (Swissvar)
Domaine pattern : Prosite (Expaxy)TGF_BETA_1 (PS00250)    TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)AMH_N    Cystine-knot_cytokine    Muellerian-inhibiting_factor    TGF-b_C    TGFb_CS   
Related proteins : CluSTrP03971
Domain families : Pfam (Sanger)AMH_N (PF04709)    TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam04709    pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
DMDM Disease mutations268
Blocks (Seattle)P03971
Human Protein AtlasENSG00000104899
Peptide AtlasP03971
HPRD02979
IPIIPI00008577   
Protein Interaction databases
DIP (DOE-UCLA)P03971
IntAct (EBI)P03971
FunCoupENSG00000104899
BioGRIDAMH
IntegromeDBAMH
STRING (EMBL)AMH
Ontologies - Pathways
QuickGOP03971
Ontology : AmiGOpreantral ovarian follicle growth  urogenital system development  Mullerian duct regression  Mullerian duct regression  receptor binding  transforming growth factor beta receptor binding  hormone activity  extracellular region  extracellular space  cytoplasm  cell-cell signaling  gonadal mesoderm development  sex determination  sex differentiation  aging  growth factor activity  positive regulation of gene expression  response to organic cyclic compound  response to drug  positive regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBIpreantral ovarian follicle growth  urogenital system development  Mullerian duct regression  Mullerian duct regression  receptor binding  transforming growth factor beta receptor binding  hormone activity  extracellular region  extracellular space  cytoplasm  cell-cell signaling  gonadal mesoderm development  sex determination  sex differentiation  aging  growth factor activity  positive regulation of gene expression  response to organic cyclic compound  response to drug  positive regulation of NF-kappaB transcription factor activity  
Pathways : KEGGCytokine-cytokine receptor interaction    TGF-beta signaling pathway    Hippo signaling pathway   
Protein Interaction DatabaseAMH
DoCM (Curated mutations)AMH
Wikipedia pathwaysAMH
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerAMH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMH
dbVarAMH
ClinVarAMH
1000_GenomesAMH 
Exome Variant ServerAMH
SNP (GeneSNP Utah)AMH
SNP : HGBaseAMH
Genetic variants : HAPMAPAMH
Genomic Variants (DGV)AMH [DGVbeta]
Mutations
ICGC Data PortalENSG00000104899 
Somatic Mutations in Cancer : COSMICAMH 
CONAN: Copy Number AnalysisAMH 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:2249113-2252072
Mutations and Diseases : HGMDAMH
OMIM261550    600957   
MedgenAMH
NextProtP03971 [Medical]
GENETestsAMH
Disease Genetic AssociationAMH
Huge Navigator AMH [HugePedia]  AMH [HugeCancerGEM]
snp3D : Map Gene to Disease268
DGIdb (Drug Gene Interaction db)AMH
General knowledge
Homologs : HomoloGeneAMH
Homology/Alignments : Family Browser (UCSC)AMH
Phylogenetic Trees/Animal Genes : TreeFamAMH
Chemical/Protein Interactions : CTD268
Chemical/Pharm GKB GenePA24769
Clinical trialAMH
Cancer Resource (Charite)ENSG00000104899
Other databases
Probes
Litterature
PubMed199 Pubmed reference(s) in Entrez
CoreMineAMH
GoPubMedAMH
iHOPAMH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 14:37:24 CET 2015
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