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AMICA1 (adhesion molecule, interacts with CXADR antigen 1)

Identity

Other aliasAMICA
CREA7-1
CREA7-4
Gm638
JAML
HGNC (Hugo) AMICA1
LocusID (NCBI) 120425
Atlas_Id 60273
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118064442 and ends at 118095809 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMICA1   19084
Cards
Entrez_Gene (NCBI)AMICA1  120425  adhesion molecule, interacts with CXADR antigen 1
AliasesAMICA; CREA7-1; CREA7-4; Gm638; 
JAML
GeneCards (Weizmann)AMICA1
Ensembl hg19 (Hinxton)ENSG00000160593 [Gene_View]  chr11:118064442-118095809 [Contig_View]  AMICA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160593 [Gene_View]  chr11:118064442-118095809 [Contig_View]  AMICA1 [Vega]
ICGC DataPortalENSG00000160593
TCGA cBioPortalAMICA1
AceView (NCBI)AMICA1
Genatlas (Paris)AMICA1
WikiGenes120425
SOURCE (Princeton)AMICA1
Genetics Home Reference (NIH)AMICA1
Genomic and cartography
GoldenPath hg19 (UCSC)AMICA1  -     chr11:118064442-118095809 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AMICA1  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblAMICA1 - 11q23.3 [CytoView hg19]  AMICA1 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIAMICA1 [Mapview hg19]  AMICA1 [Mapview hg38]
OMIM609770   
Gene and transcription
Genbank (Entrez)AJ515553 AK057590 AK090409 AK094399 AK097285
RefSeq transcript (Entrez)NM_001098526 NM_001286570 NM_001286571 NM_153206
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)AMICA1
Cluster EST : UnigeneHs.16291 [ NCBI ]
CGAP (NCI)Hs.16291
Alternative Splicing GalleryENSG00000160593
Gene ExpressionAMICA1 [ NCBI-GEO ]   AMICA1 [ EBI - ARRAY_EXPRESS ]   AMICA1 [ SEEK ]   AMICA1 [ MEM ]
Gene Expression Viewer (FireBrowse)AMICA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)120425
GTEX Portal (Tissue expression)AMICA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YT9
Splice isoforms : SwissVarQ86YT9
PhosPhoSitePlusQ86YT9
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    JAML    Myelin_P0_rel   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)AMICA1
DMDM Disease mutations120425
Blocks (Seattle)AMICA1
SuperfamilyQ86YT9
Human Protein AtlasENSG00000160593
Peptide AtlasQ86YT9
HPRD16482
IPIIPI00385063   IPI00183703   IPI00607549   IPI00909734   IPI00981207   IPI00984583   IPI01019082   IPI00981282   IPI00980646   
Protein Interaction databases
DIP (DOE-UCLA)Q86YT9
IntAct (EBI)Q86YT9
FunCoupENSG00000160593
BioGRIDAMICA1
STRING (EMBL)AMICA1
ZODIACAMICA1
Ontologies - Pathways
QuickGOQ86YT9
Ontology : AmiGOintegrin binding  plasma membrane  plasma membrane  bicellular tight junction  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  blood coagulation  integral component of membrane  neutrophil chemotaxis  monocyte extravasation  protein homodimerization activity  gamma-delta T cell activation  regulation of immune response  cell adhesion molecule binding  leukocyte migration  positive regulation of epithelial cell proliferation involved in wound healing  neutrophil extravasation  
Ontology : EGO-EBIintegrin binding  plasma membrane  plasma membrane  bicellular tight junction  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  blood coagulation  integral component of membrane  neutrophil chemotaxis  monocyte extravasation  protein homodimerization activity  gamma-delta T cell activation  regulation of immune response  cell adhesion molecule binding  leukocyte migration  positive regulation of epithelial cell proliferation involved in wound healing  neutrophil extravasation  
NDEx NetworkAMICA1
Atlas of Cancer Signalling NetworkAMICA1
Wikipedia pathwaysAMICA1
Orthology - Evolution
OrthoDB120425
GeneTree (enSembl)ENSG00000160593
Phylogenetic Trees/Animal Genes : TreeFamAMICA1
HOVERGENQ86YT9
HOGENOMQ86YT9
Homologs : HomoloGeneAMICA1
Homology/Alignments : Family Browser (UCSC)AMICA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMICA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMICA1
dbVarAMICA1
ClinVarAMICA1
1000_GenomesAMICA1 
Exome Variant ServerAMICA1
ExAC (Exome Aggregation Consortium)AMICA1 (select the gene name)
Genetic variants : HAPMAP120425
Genomic Variants (DGV)AMICA1 [DGVbeta]
DECIPHER (Syndromes)11:118064442-118095809  ENSG00000160593
CONAN: Copy Number AnalysisAMICA1 
Mutations
ICGC Data PortalAMICA1 
TCGA Data PortalAMICA1 
Broad Tumor PortalAMICA1
OASIS PortalAMICA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMICA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMICA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMICA1
DgiDB (Drug Gene Interaction Database)AMICA1
DoCM (Curated mutations)AMICA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMICA1 (select a term)
intoGenAMICA1
Cancer3DAMICA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609770   
Orphanet
MedgenAMICA1
Genetic Testing Registry AMICA1
NextProtQ86YT9 [Medical]
TSGene120425
GENETestsAMICA1
Huge Navigator AMICA1 [HugePedia]
snp3D : Map Gene to Disease120425
BioCentury BCIQAMICA1
ClinGenAMICA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD120425
Chemical/Pharm GKB GenePA38792
Clinical trialAMICA1
Miscellaneous
canSAR (ICR)AMICA1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMICA1
EVEXAMICA1
GoPubMedAMICA1
iHOPAMICA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:10 CET 2017

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