Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AMIGO1 (adhesion molecule with Ig like domain 1)

Identity

Alias_symbol (synonym)AMIGO
KIAA1163
Other aliasALI2
AMIGO-1
HGNC (Hugo) AMIGO1
LocusID (NCBI) 57463
Atlas_Id 60274
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109506824 and ends at 109509714 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PEBP1 (12q24.23) / AMIGO1 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMIGO1   20824
Cards
Entrez_Gene (NCBI)AMIGO1  57463  adhesion molecule with Ig like domain 1
AliasesALI2; AMIGO; AMIGO-1
GeneCards (Weizmann)AMIGO1
Ensembl hg19 (Hinxton)ENSG00000181754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181754 [Gene_View]  chr1:109506824-109509714 [Contig_View]  AMIGO1 [Vega]
ICGC DataPortalENSG00000181754
TCGA cBioPortalAMIGO1
AceView (NCBI)AMIGO1
Genatlas (Paris)AMIGO1
WikiGenes57463
SOURCE (Princeton)AMIGO1
Genetics Home Reference (NIH)AMIGO1
Genomic and cartography
GoldenPath hg38 (UCSC)AMIGO1  -     chr1:109506824-109509714 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMIGO1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblAMIGO1 - 1p13.3 [CytoView hg19]  AMIGO1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIAMIGO1 [Mapview hg19]  AMIGO1 [Mapview hg38]
OMIM615689   
Gene and transcription
Genbank (Entrez)AB032989 AK295678 AY237007 BC040879 DC317707
RefSeq transcript (Entrez)NM_020703
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMIGO1
Cluster EST : UnigeneHs.726479 [ NCBI ]
CGAP (NCI)Hs.726479
Alternative Splicing GalleryENSG00000181754
Gene ExpressionAMIGO1 [ NCBI-GEO ]   AMIGO1 [ EBI - ARRAY_EXPRESS ]   AMIGO1 [ SEEK ]   AMIGO1 [ MEM ]
Gene Expression Viewer (FireBrowse)AMIGO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57463
GTEX Portal (Tissue expression)AMIGO1
Human Protein AtlasENSG00000181754-AMIGO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WK6
Splice isoforms : SwissVarQ86WK6
PhosPhoSitePlusQ86WK6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)AMIGO    AMIGO1    Cys-rich_flank_reg_C    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)I-set (PF07679)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam07679    pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)AMIGO1
DMDM Disease mutations57463
Blocks (Seattle)AMIGO1
SuperfamilyQ86WK6
Human Protein Atlas [tissue]ENSG00000181754-AMIGO1 [tissue]
Peptide AtlasQ86WK6
HPRD11129
IPIIPI00410140   
Protein Interaction databases
DIP (DOE-UCLA)Q86WK6
IntAct (EBI)Q86WK6
FunCoupENSG00000181754
BioGRIDAMIGO1
STRING (EMBL)AMIGO1
ZODIACAMIGO1
Ontologies - Pathways
QuickGOQ86WK6
Ontology : AmiGOhomophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  axonogenesis  axonal fasciculation  voltage-gated potassium channel complex  potassium channel regulator activity  axon  dendrite  neuronal cell body membrane  myelination  perikaryon  positive regulation of axonogenesis  positive regulation of synapse assembly  regulation of molecular function  positive regulation of potassium ion transmembrane transport  
Ontology : EGO-EBIhomophilic cell adhesion via plasma membrane adhesion molecules  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  axonogenesis  axonal fasciculation  voltage-gated potassium channel complex  potassium channel regulator activity  axon  dendrite  neuronal cell body membrane  myelination  perikaryon  positive regulation of axonogenesis  positive regulation of synapse assembly  regulation of molecular function  positive regulation of potassium ion transmembrane transport  
NDEx NetworkAMIGO1
Atlas of Cancer Signalling NetworkAMIGO1
Wikipedia pathwaysAMIGO1
Orthology - Evolution
OrthoDB57463
GeneTree (enSembl)ENSG00000181754
Phylogenetic Trees/Animal Genes : TreeFamAMIGO1
HOVERGENQ86WK6
HOGENOMQ86WK6
Homologs : HomoloGeneAMIGO1
Homology/Alignments : Family Browser (UCSC)AMIGO1
Gene fusions - Rearrangements
Tumor Fusion PortalAMIGO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMIGO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMIGO1
dbVarAMIGO1
ClinVarAMIGO1
1000_GenomesAMIGO1 
Exome Variant ServerAMIGO1
ExAC (Exome Aggregation Consortium)ENSG00000181754
GNOMAD BrowserENSG00000181754
Genetic variants : HAPMAP57463
Genomic Variants (DGV)AMIGO1 [DGVbeta]
DECIPHERAMIGO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMIGO1 
Mutations
ICGC Data PortalAMIGO1 
TCGA Data PortalAMIGO1 
Broad Tumor PortalAMIGO1
OASIS PortalAMIGO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMIGO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMIGO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMIGO1
DgiDB (Drug Gene Interaction Database)AMIGO1
DoCM (Curated mutations)AMIGO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMIGO1 (select a term)
intoGenAMIGO1
Cancer3DAMIGO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615689   
Orphanet
DisGeNETAMIGO1
MedgenAMIGO1
Genetic Testing Registry AMIGO1
NextProtQ86WK6 [Medical]
TSGene57463
GENETestsAMIGO1
Target ValidationAMIGO1
Huge Navigator AMIGO1 [HugePedia]
snp3D : Map Gene to Disease57463
BioCentury BCIQAMIGO1
ClinGenAMIGO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57463
Chemical/Pharm GKB GenePA142672625
Clinical trialAMIGO1
Miscellaneous
canSAR (ICR)AMIGO1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMIGO1
EVEXAMIGO1
GoPubMedAMIGO1
iHOPAMIGO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:12 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.