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AMIGO3 (adhesion molecule with Ig like domain 3)

Identity

Other aliasALI3
AMIGO-3
HGNC (Hugo) AMIGO3
LocusID (NCBI) 386724
Atlas_Id 60275
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49716834 and ends at 49719805 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMIGO3   24075
Cards
Entrez_Gene (NCBI)AMIGO3  386724  adhesion molecule with Ig like domain 3
AliasesALI3; AMIGO-3
GeneCards (Weizmann)AMIGO3
Ensembl hg19 (Hinxton)ENSG00000176020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176020 [Gene_View]  chr3:49716834-49719805 [Contig_View]  AMIGO3 [Vega]
ICGC DataPortalENSG00000176020
TCGA cBioPortalAMIGO3
AceView (NCBI)AMIGO3
Genatlas (Paris)AMIGO3
WikiGenes386724
SOURCE (Princeton)AMIGO3
Genetics Home Reference (NIH)AMIGO3
Genomic and cartography
GoldenPath hg38 (UCSC)AMIGO3  -     chr3:49716834-49719805 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMIGO3  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblAMIGO3 - 3p21.31 [CytoView hg19]  AMIGO3 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIAMIGO3 [Mapview hg19]  AMIGO3 [Mapview hg38]
OMIM615691   
Gene and transcription
Genbank (Entrez)AY237003 AY358134 BC101363 BC101364 BC101365
RefSeq transcript (Entrez)NM_198722
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMIGO3
Cluster EST : UnigeneHs.567903 [ NCBI ]
CGAP (NCI)Hs.567903
Alternative Splicing GalleryENSG00000176020
Gene ExpressionAMIGO3 [ NCBI-GEO ]   AMIGO3 [ EBI - ARRAY_EXPRESS ]   AMIGO3 [ SEEK ]   AMIGO3 [ MEM ]
Gene Expression Viewer (FireBrowse)AMIGO3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386724
GTEX Portal (Tissue expression)AMIGO3
Human Protein AtlasENSG00000176020-AMIGO3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WK7
Splice isoforms : SwissVarQ86WK7
PhosPhoSitePlusQ86WK7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    LRR (PS51450)   
Domains : Interpro (EBI)AMIGO    AMIGO3    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  LRR_TYP (SM00369)  
Conserved Domain (NCBI)AMIGO3
DMDM Disease mutations386724
Blocks (Seattle)AMIGO3
SuperfamilyQ86WK7
Human Protein Atlas [tissue]ENSG00000176020-AMIGO3 [tissue]
Peptide AtlasQ86WK7
HPRD16484
IPIIPI00552093   
Protein Interaction databases
DIP (DOE-UCLA)Q86WK7
IntAct (EBI)Q86WK7
FunCoupENSG00000176020
BioGRIDAMIGO3
STRING (EMBL)AMIGO3
ZODIACAMIGO3
Ontologies - Pathways
QuickGOQ86WK7
Ontology : AmiGOheterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  positive regulation of synapse assembly  
Ontology : EGO-EBIheterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  positive regulation of synapse assembly  
NDEx NetworkAMIGO3
Atlas of Cancer Signalling NetworkAMIGO3
Wikipedia pathwaysAMIGO3
Orthology - Evolution
OrthoDB386724
GeneTree (enSembl)ENSG00000176020
Phylogenetic Trees/Animal Genes : TreeFamAMIGO3
HOVERGENQ86WK7
HOGENOMQ86WK7
Homologs : HomoloGeneAMIGO3
Homology/Alignments : Family Browser (UCSC)AMIGO3
Gene fusions - Rearrangements
Tumor Fusion PortalAMIGO3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMIGO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMIGO3
dbVarAMIGO3
ClinVarAMIGO3
1000_GenomesAMIGO3 
Exome Variant ServerAMIGO3
ExAC (Exome Aggregation Consortium)ENSG00000176020
GNOMAD BrowserENSG00000176020
Genetic variants : HAPMAP386724
Genomic Variants (DGV)AMIGO3 [DGVbeta]
DECIPHERAMIGO3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMIGO3 
Mutations
ICGC Data PortalAMIGO3 
TCGA Data PortalAMIGO3 
Broad Tumor PortalAMIGO3
OASIS PortalAMIGO3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMIGO3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMIGO3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMIGO3
DgiDB (Drug Gene Interaction Database)AMIGO3
DoCM (Curated mutations)AMIGO3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMIGO3 (select a term)
intoGenAMIGO3
Cancer3DAMIGO3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615691   
Orphanet
DisGeNETAMIGO3
MedgenAMIGO3
Genetic Testing Registry AMIGO3
NextProtQ86WK7 [Medical]
TSGene386724
GENETestsAMIGO3
Target ValidationAMIGO3
Huge Navigator AMIGO3 [HugePedia]
snp3D : Map Gene to Disease386724
BioCentury BCIQAMIGO3
ClinGenAMIGO3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386724
Chemical/Pharm GKB GenePA142672627
Clinical trialAMIGO3
Miscellaneous
canSAR (ICR)AMIGO3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMIGO3
EVEXAMIGO3
GoPubMedAMIGO3
iHOPAMIGO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:57 CET 2017

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