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AMMECR1 (AMMECR nuclear protein 1)

Identity

Alias (NCBI)AMMERC1
MFHIEN
HGNC (Hugo) AMMECR1
HGNC Previous nameAlport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
LocusID (NCBI) 9949
Atlas_Id 46672
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110194186 and ends at 110318085 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AMMECR1 (Xq23) / CISH (3p21.2)AMMECR1 (Xq23) / ELL3 (15q15.3)AMMECR1 (Xq23) / PLA2G12B (10q22.1)
VPS13C (15q22.2) / AMMECR1 (Xq23)AMMECR1 Xq23 / PLA2G12B 10q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(X;10)(q23;q22) AMMECR1/PLA2G12B


External links

Nomenclature
HGNC (Hugo)AMMECR1   467
Cards
Entrez_Gene (NCBI)AMMECR1    AMMECR nuclear protein 1
AliasesAMMERC1; MFHIEN
GeneCards (Weizmann)AMMECR1
Ensembl hg19 (Hinxton)ENSG00000101935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101935 [Gene_View]  ENSG00000101935 [Sequence]  chrX:110194186-110318085 [Contig_View]  AMMECR1 [Vega]
ICGC DataPortalENSG00000101935
TCGA cBioPortalAMMECR1
AceView (NCBI)AMMECR1
Genatlas (Paris)AMMECR1
SOURCE (Princeton)AMMECR1
Genetics Home Reference (NIH)AMMECR1
Genomic and cartography
GoldenPath hg38 (UCSC)AMMECR1  -     chrX:110194186-110318085 -  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMMECR1  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathAMMECR1 - Xq23 [CytoView hg19]  AMMECR1 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000101935
genome Data Viewer NCBIAMMECR1 [Mapview hg19]  
OMIM300195   300990   
Gene and transcription
Genbank (Entrez)AJ007014 AK001703 AK023637 AK055321 AK091430
RefSeq transcript (Entrez)NM_001025580 NM_001171689 NM_015365
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMMECR1
Alternative Splicing GalleryENSG00000101935
Gene ExpressionAMMECR1 [ NCBI-GEO ]   AMMECR1 [ EBI - ARRAY_EXPRESS ]   AMMECR1 [ SEEK ]   AMMECR1 [ MEM ]
Gene Expression Viewer (FireBrowse)AMMECR1 [ Firebrowse - Broad ]
GenevisibleExpression of AMMECR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9949
GTEX Portal (Tissue expression)AMMECR1
Human Protein AtlasENSG00000101935-AMMECR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4X0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4X0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4X0
Splice isoforms : SwissVarQ9Y4X0
PhosPhoSitePlusQ9Y4X0
Domaine pattern : Prosite (Expaxy)AMMECR1 (PS51112)   
Domains : Interpro (EBI)AMMECR1    AMMECR1_dom_sf    AMMECR1_domain    AMMECR1_N   
Domain families : Pfam (Sanger)AMMECR1 (PF01871)   
Domain families : Pfam (NCBI)pfam01871   
Conserved Domain (NCBI)AMMECR1
Blocks (Seattle)AMMECR1
SuperfamilyQ9Y4X0
Human Protein Atlas [tissue]ENSG00000101935-AMMECR1 [tissue]
Peptide AtlasQ9Y4X0
HPRD02182
IPIIPI00022258   IPI00375048   IPI00719771   IPI00646629   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4X0
IntAct (EBI)Q9Y4X0
BioGRIDAMMECR1
STRING (EMBL)AMMECR1
ZODIACAMMECR1
Ontologies - Pathways
QuickGOQ9Y4X0
Ontology : AmiGOprotein binding  nucleus  nucleus  nucleoplasm  mitochondrion  biological_process  
Ontology : EGO-EBIprotein binding  nucleus  nucleus  nucleoplasm  mitochondrion  biological_process  
NDEx NetworkAMMECR1
Atlas of Cancer Signalling NetworkAMMECR1
Wikipedia pathwaysAMMECR1
Orthology - Evolution
OrthoDB9949
GeneTree (enSembl)ENSG00000101935
Phylogenetic Trees/Animal Genes : TreeFamAMMECR1
HOGENOMQ9Y4X0
Homologs : HomoloGeneAMMECR1
Homology/Alignments : Family Browser (UCSC)AMMECR1
Gene fusions - Rearrangements
Fusion : MitelmanAMMECR1/PLA2G12B [Xq23/10q22.1]  
Fusion PortalAMMECR1 Xq23 PLA2G12B 10q22.1 LUAD
Fusion : QuiverAMMECR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMMECR1 [hg38]
dbVarAMMECR1
ClinVarAMMECR1
MonarchAMMECR1
1000_GenomesAMMECR1 
Exome Variant ServerAMMECR1
GNOMAD BrowserENSG00000101935
Varsome BrowserAMMECR1
Genomic Variants (DGV)AMMECR1 [DGVbeta]
DECIPHERAMMECR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMMECR1 
Mutations
ICGC Data PortalAMMECR1 
TCGA Data PortalAMMECR1 
Broad Tumor PortalAMMECR1
OASIS PortalAMMECR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMMECR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DAMMECR1
Mutations and Diseases : HGMDAMMECR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch AMMECR1
DgiDB (Drug Gene Interaction Database)AMMECR1
DoCM (Curated mutations)AMMECR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMMECR1 (select a term)
intoGenAMMECR1
Cancer3DAMMECR1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300195    300990   
Orphanet11738   
DisGeNETAMMECR1
MedgenAMMECR1
Genetic Testing Registry AMMECR1
NextProtQ9Y4X0 [Medical]
GENETestsAMMECR1
Target ValidationAMMECR1
Huge Navigator AMMECR1 [HugePedia]
ClinGenAMMECR1
Clinical trials, drugs, therapy
MyCancerGenomeAMMECR1
Protein Interactions : CTD
Pharm GKB GenePA24772
PharosQ9Y4X0
Clinical trialAMMECR1
Miscellaneous
canSAR (ICR)AMMECR1 (select the gene name)
HarmonizomeAMMECR1
DataMed IndexAMMECR1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXAMMECR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:05:17 CET 2021

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