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AMMECR1L (AMMECR1 like)

Identity

Alias_namesAMME chromosomal region gene 1-like
AMMECR1-like
Alias_symbol (synonym)MGC4268
Other alias-
HGNC (Hugo) AMMECR1L
LocusID (NCBI) 83607
Atlas_Id 60276
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 127861631 and ends at 127885940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMMECR1L (2q14.3) / SAP130 (2q14.3)AMMECR1L (2q14.3) / TNFRSF10C (8p21.3)AMMECR1L SAP130
AMMECR1L TNFRSF10C

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMMECR1L   28658
Cards
Entrez_Gene (NCBI)AMMECR1L  83607  AMMECR1 like
Aliases
GeneCards (Weizmann)AMMECR1L
Ensembl hg19 (Hinxton)ENSG00000144233 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144233 [Gene_View]  chr2:127861631-127885940 [Contig_View]  AMMECR1L [Vega]
ICGC DataPortalENSG00000144233
TCGA cBioPortalAMMECR1L
AceView (NCBI)AMMECR1L
Genatlas (Paris)AMMECR1L
WikiGenes83607
SOURCE (Princeton)AMMECR1L
Genetics Home Reference (NIH)AMMECR1L
Genomic and cartography
GoldenPath hg38 (UCSC)AMMECR1L  -     chr2:127861631-127885940 -  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMMECR1L  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblAMMECR1L - 2q14.3 [CytoView hg19]  AMMECR1L - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIAMMECR1L [Mapview hg19]  AMMECR1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024993 AK026685 AK095871 AK304145 AL137415
RefSeq transcript (Entrez)NM_001199140 NM_031445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMMECR1L
Cluster EST : UnigeneHs.546449 [ NCBI ]
CGAP (NCI)Hs.546449
Alternative Splicing GalleryENSG00000144233
Gene ExpressionAMMECR1L [ NCBI-GEO ]   AMMECR1L [ EBI - ARRAY_EXPRESS ]   AMMECR1L [ SEEK ]   AMMECR1L [ MEM ]
Gene Expression Viewer (FireBrowse)AMMECR1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83607
GTEX Portal (Tissue expression)AMMECR1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DCA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DCA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DCA0
Splice isoforms : SwissVarQ6DCA0
PhosPhoSitePlusQ6DCA0
Domaine pattern : Prosite (Expaxy)AMMECR1 (PS51112)   
Domains : Interpro (EBI)AMMECR1    AMMECR1_domain    AMMECR1_N   
Domain families : Pfam (Sanger)AMMECR1 (PF01871)   
Domain families : Pfam (NCBI)pfam01871   
Conserved Domain (NCBI)AMMECR1L
DMDM Disease mutations83607
Blocks (Seattle)AMMECR1L
SuperfamilyQ6DCA0
Human Protein AtlasENSG00000144233
Peptide AtlasQ6DCA0
HPRD14625
IPIIPI00027790   
Protein Interaction databases
DIP (DOE-UCLA)Q6DCA0
IntAct (EBI)Q6DCA0
FunCoupENSG00000144233
BioGRIDAMMECR1L
STRING (EMBL)AMMECR1L
ZODIACAMMECR1L
Ontologies - Pathways
QuickGOQ6DCA0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkAMMECR1L
Atlas of Cancer Signalling NetworkAMMECR1L
Wikipedia pathwaysAMMECR1L
Orthology - Evolution
OrthoDB83607
GeneTree (enSembl)ENSG00000144233
Phylogenetic Trees/Animal Genes : TreeFamAMMECR1L
HOVERGENQ6DCA0
HOGENOMQ6DCA0
Homologs : HomoloGeneAMMECR1L
Homology/Alignments : Family Browser (UCSC)AMMECR1L
Gene fusions - Rearrangements
Fusion: TCGAAMMECR1L SAP130
Fusion: TCGAAMMECR1L TNFRSF10C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMMECR1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMMECR1L
dbVarAMMECR1L
ClinVarAMMECR1L
1000_GenomesAMMECR1L 
Exome Variant ServerAMMECR1L
ExAC (Exome Aggregation Consortium)AMMECR1L (select the gene name)
Genetic variants : HAPMAP83607
Genomic Variants (DGV)AMMECR1L [DGVbeta]
DECIPHERAMMECR1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMMECR1L 
Mutations
ICGC Data PortalAMMECR1L 
TCGA Data PortalAMMECR1L 
Broad Tumor PortalAMMECR1L
OASIS PortalAMMECR1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMMECR1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMMECR1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMMECR1L
DgiDB (Drug Gene Interaction Database)AMMECR1L
DoCM (Curated mutations)AMMECR1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMMECR1L (select a term)
intoGenAMMECR1L
Cancer3DAMMECR1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAMMECR1L
Genetic Testing Registry AMMECR1L
NextProtQ6DCA0 [Medical]
TSGene83607
GENETestsAMMECR1L
Target ValidationAMMECR1L
Huge Navigator AMMECR1L [HugePedia]
snp3D : Map Gene to Disease83607
BioCentury BCIQAMMECR1L
ClinGenAMMECR1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83607
Chemical/Pharm GKB GenePA162376350
Clinical trialAMMECR1L
Miscellaneous
canSAR (ICR)AMMECR1L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMMECR1L
EVEXAMMECR1L
GoPubMedAMMECR1L
iHOPAMMECR1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:13 CEST 2017

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