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AMN (amnion associated transmembrane protein)

Identity

Alias_namesamnionless homolog (mouse)
Alias_symbol (synonym)amnionless
Other aliasPRO1028
HGNC (Hugo) AMN
LocusID (NCBI) 81693
Atlas_Id 60277
Location 14q32.32  [Link to chromosome band 14q32]
Location_base_pair Starts at 102922656 and ends at 102930842 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMN   14604
LRG (Locus Reference Genomic)LRG_642
Cards
Entrez_Gene (NCBI)AMN  81693  amnion associated transmembrane protein
AliasesPRO1028; amnionless
GeneCards (Weizmann)AMN
Ensembl hg19 (Hinxton)ENSG00000166126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166126 [Gene_View]  chr14:102922656-102930842 [Contig_View]  AMN [Vega]
ICGC DataPortalENSG00000166126
TCGA cBioPortalAMN
AceView (NCBI)AMN
Genatlas (Paris)AMN
WikiGenes81693
SOURCE (Princeton)AMN
Genetics Home Reference (NIH)AMN
Genomic and cartography
GoldenPath hg38 (UCSC)AMN  -     chr14:102922656-102930842 +  14q32.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMN  -     14q32.32   [Description]    (hg19-Feb_2009)
EnsemblAMN - 14q32.32 [CytoView hg19]  AMN - 14q32.32 [CytoView hg38]
Mapping of homologs : NCBIAMN [Mapview hg19]  AMN [Mapview hg38]
OMIM261100   605799   
Gene and transcription
Genbank (Entrez)AF328788 AK055802 AY358468 BC029948 CB306421
RefSeq transcript (Entrez)NM_030943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMN
Cluster EST : UnigeneHs.534494 [ NCBI ]
CGAP (NCI)Hs.534494
Alternative Splicing GalleryENSG00000166126
Gene ExpressionAMN [ NCBI-GEO ]   AMN [ EBI - ARRAY_EXPRESS ]   AMN [ SEEK ]   AMN [ MEM ]
Gene Expression Viewer (FireBrowse)AMN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81693
GTEX Portal (Tissue expression)AMN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ7
Splice isoforms : SwissVarQ9BXJ7
PhosPhoSitePlusQ9BXJ7
Domains : Interpro (EBI)AMN   
Domain families : Pfam (Sanger)Amnionless (PF14828)   
Domain families : Pfam (NCBI)pfam14828   
Conserved Domain (NCBI)AMN
DMDM Disease mutations81693
Blocks (Seattle)AMN
SuperfamilyQ9BXJ7
Human Protein AtlasENSG00000166126
Peptide AtlasQ9BXJ7
HPRD09314
IPIIPI00008857   IPI01010831   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ7
IntAct (EBI)Q9BXJ7
FunCoupENSG00000166126
BioGRIDAMN
STRING (EMBL)AMN
ZODIACAMN
Ontologies - Pathways
QuickGOQ9BXJ7
Ontology : AmiGOreceptor binding  extracellular space  plasma membrane  clathrin-coated pit  receptor-mediated endocytosis  receptor-mediated endocytosis  multicellular organism development  excretion  cobalamin metabolic process  endosome membrane  cobalamin transport  integral component of membraneapical plasma membrane  endocytic vesicle  brush border membrane  lipoprotein metabolic process  Golgi to plasma membrane protein transport  protein complex  extracellular exosome  
Ontology : EGO-EBIreceptor binding  extracellular space  plasma membrane  clathrin-coated pit  receptor-mediated endocytosis  receptor-mediated endocytosis  multicellular organism development  excretion  cobalamin metabolic process  endosome membrane  cobalamin transport  integral component of membrane  apical plasma membrane  endocytic vesicle  brush border membrane  lipoprotein metabolic process  Golgi to plasma membrane protein transport  protein complex  extracellular exosome  
NDEx NetworkAMN
Atlas of Cancer Signalling NetworkAMN
Wikipedia pathwaysAMN
Orthology - Evolution
OrthoDB81693
GeneTree (enSembl)ENSG00000166126
Phylogenetic Trees/Animal Genes : TreeFamAMN
HOVERGENQ9BXJ7
HOGENOMQ9BXJ7
Homologs : HomoloGeneAMN
Homology/Alignments : Family Browser (UCSC)AMN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMN
dbVarAMN
ClinVarAMN
1000_GenomesAMN 
Exome Variant ServerAMN
ExAC (Exome Aggregation Consortium)AMN (select the gene name)
Genetic variants : HAPMAP81693
Genomic Variants (DGV)AMN [DGVbeta]
DECIPHERAMN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMN 
Mutations
ICGC Data PortalAMN 
TCGA Data PortalAMN 
Broad Tumor PortalAMN
OASIS PortalAMN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMN
DgiDB (Drug Gene Interaction Database)AMN
DoCM (Curated mutations)AMN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMN (select a term)
intoGenAMN
Cancer3DAMN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM261100    605799   
Orphanet10402   
MedgenAMN
Genetic Testing Registry AMN
NextProtQ9BXJ7 [Medical]
TSGene81693
GENETestsAMN
Target ValidationAMN
Huge Navigator AMN [HugePedia]
snp3D : Map Gene to Disease81693
BioCentury BCIQAMN
ClinGenAMN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81693
Chemical/Pharm GKB GenePA134962814
Clinical trialAMN
Miscellaneous
canSAR (ICR)AMN (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMN
EVEXAMN
GoPubMedAMN
iHOPAMN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:14 CEST 2017

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