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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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AMPD1 (adenosine monophosphate deaminase 1)

Identity

Other namesMAD
MADA
MMDD
HGNC (Hugo) AMPD1
LocusID (NCBI) 270
Location 1p13.2
Location_base_pair Starts at 115215720 and ends at 115238239 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AMPD1   468
Cards
Entrez_Gene (NCBI)AMPD1  270  adenosine monophosphate deaminase 1
GeneCards (Weizmann)AMPD1
Ensembl hg19 (Hinxton)ENSG00000116748 [Gene_View]  chr1:115215720-115238239 [Contig_View]  AMPD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116748 [Gene_View]  chr1:115215720-115238239 [Contig_View]  AMPD1 [Vega]
ICGC DataPortalENSG00000116748
cBioPortalAMPD1
AceView (NCBI)AMPD1
Genatlas (Paris)AMPD1
WikiGenes270
SOURCE (Princeton)AMPD1
Genomic and cartography
GoldenPath hg19 (UCSC)AMPD1  -     chr1:115215720-115238239 -  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)AMPD1  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblAMPD1 - 1p13.2 [CytoView hg19]  AMPD1 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBIAMPD1 [Mapview hg19]  AMPD1 [Mapview hg38]
OMIM102770   615511   
Gene and transcription
Genbank (Entrez)AA086476 AK097077 AK291349 AK314252 BC056678
RefSeq transcript (Entrez)NM_000036 NM_001172626
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008012 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)AMPD1
Cluster EST : UnigeneHs.89570 [ NCBI ]
CGAP (NCI)Hs.89570
Alternative Splicing : Fast-db (Paris)GSHG0002383
Alternative Splicing GalleryENSG00000116748
Gene ExpressionAMPD1 [ NCBI-GEO ]     AMPD1 [ SEEK ]   AMPD1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23109 (Uniprot)
NextProtP23109  [Medical]
With graphics : InterProP23109
Splice isoforms : SwissVarP23109 (Swissvar)
Catalytic activity : Enzyme3.5.4.6 [ Enzyme-Expasy ]   3.5.4.63.5.4.6 [ IntEnz-EBI ]   3.5.4.6 [ BRENDA ]   3.5.4.6 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)A_DEAMINASE (PS00485)   
Domains : Interpro (EBI)A/AMP_deam_AS    A/AMP_deaminase_dom    AMPD    AMPD1   
Related proteins : CluSTrP23109
Domain families : Pfam (Sanger)A_deaminase (PF00962)   
Domain families : Pfam (NCBI)pfam00962   
DMDM Disease mutations270
Blocks (Seattle)P23109
Human Protein AtlasENSG00000116748
Peptide AtlasP23109
HPRD00040
IPIIPI00185631   IPI00980902   IPI00955989   IPI00984228   
Protein Interaction databases
DIP (DOE-UCLA)P23109
IntAct (EBI)P23109
FunCoupENSG00000116748
BioGRIDAMPD1
IntegromeDBAMPD1
STRING (EMBL)AMPD1
Ontologies - Pathways
QuickGOP23109
Ontology : AmiGOAMP deaminase activity  cytosol  purine nucleobase metabolic process  response to organic substance  myosin heavy chain binding  IMP salvage  purine-containing compound salvage  small molecule metabolic process  metal ion binding  nucleobase-containing small molecule metabolic process  
Ontology : EGO-EBIAMP deaminase activity  cytosol  purine nucleobase metabolic process  response to organic substance  myosin heavy chain binding  IMP salvage  purine-containing compound salvage  small molecule metabolic process  metal ion binding  nucleobase-containing small molecule metabolic process  
Pathways : KEGGPurine metabolism   
Protein Interaction DatabaseAMPD1
DoCM (Curated mutations)AMPD1
Wikipedia pathwaysAMPD1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerAMPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMPD1
dbVarAMPD1
ClinVarAMPD1
1000_GenomesAMPD1 
Exome Variant ServerAMPD1
SNP (GeneSNP Utah)AMPD1
SNP : HGBaseAMPD1
Genetic variants : HAPMAPAMPD1
Genomic Variants (DGV)AMPD1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000116748 
Somatic Mutations in Cancer : COSMICAMPD1 
CONAN: Copy Number AnalysisAMPD1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:115215720-115238239
Mutations and Diseases : HGMDAMPD1
OMIM102770    615511   
MedgenAMPD1
NextProtP23109 [Medical]
GENETestsAMPD1
Disease Genetic AssociationAMPD1
Huge Navigator AMPD1 [HugePedia]  AMPD1 [HugeCancerGEM]
snp3D : Map Gene to Disease270
DGIdb (Drug Gene Interaction db)AMPD1
General knowledge
Homologs : HomoloGeneAMPD1
Homology/Alignments : Family Browser (UCSC)AMPD1
Phylogenetic Trees/Animal Genes : TreeFamAMPD1
Chemical/Protein Interactions : CTD270
Chemical/Pharm GKB GenePA24776
Clinical trialAMPD1
Cancer Resource (Charite)ENSG00000116748
Other databases
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
CoreMineAMPD1
GoPubMedAMPD1
iHOPAMPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 14:42:19 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.