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AMTN (amelotin)

Identity

Alias_symbol (synonym)UNQ689
RSTI689
Other alias
HGNC (Hugo) AMTN
LocusID (NCBI) 401138
Atlas_Id 60280
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70518572 and ends at 70532743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADGRL3 (4q13.1) / AMTN (4q13.3)MKLN1 (7q32.3) / AMTN (4q13.3)LPHN3 AMTN
MKLN1 AMTN

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMTN   33188
Cards
Entrez_Gene (NCBI)AMTN  401138  amelotin
AliasesUNQ689
GeneCards (Weizmann)AMTN
Ensembl hg19 (Hinxton)ENSG00000187689 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187689 [Gene_View]  chr4:70518572-70532743 [Contig_View]  AMTN [Vega]
ICGC DataPortalENSG00000187689
TCGA cBioPortalAMTN
AceView (NCBI)AMTN
Genatlas (Paris)AMTN
WikiGenes401138
SOURCE (Princeton)AMTN
Genetics Home Reference (NIH)AMTN
Genomic and cartography
GoldenPath hg38 (UCSC)AMTN  -     chr4:70518572-70532743 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMTN  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblAMTN - 4q13.3 [CytoView hg19]  AMTN - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIAMTN [Mapview hg19]  AMTN [Mapview hg38]
OMIM610912   
Gene and transcription
Genbank (Entrez)AB593161 AY358528 BC121812 BC121817 BF664579
RefSeq transcript (Entrez)NM_001286731 NM_212557
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMTN
Cluster EST : UnigeneHs.453069 [ NCBI ]
CGAP (NCI)Hs.453069
Alternative Splicing GalleryENSG00000187689
Gene ExpressionAMTN [ NCBI-GEO ]   AMTN [ EBI - ARRAY_EXPRESS ]   AMTN [ SEEK ]   AMTN [ MEM ]
Gene Expression Viewer (FireBrowse)AMTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401138
GTEX Portal (Tissue expression)AMTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX39
Splice isoforms : SwissVarQ6UX39
PhosPhoSitePlusQ6UX39
Domains : Interpro (EBI)Amelotin   
Domain families : Pfam (Sanger)Amelotin (PF15757)   
Domain families : Pfam (NCBI)pfam15757   
Domain structure : Prodom (Prabi Lyon)PD400414 (PD400414)   
Conserved Domain (NCBI)AMTN
DMDM Disease mutations401138
Blocks (Seattle)AMTN
SuperfamilyQ6UX39
Human Protein AtlasENSG00000187689
Peptide AtlasQ6UX39
HPRD18270
IPIIPI00401058   IPI00830012   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX39
IntAct (EBI)Q6UX39
FunCoupENSG00000187689
BioGRIDAMTN
STRING (EMBL)AMTN
ZODIACAMTN
Ontologies - Pathways
QuickGOQ6UX39
Ontology : AmiGOmolecular_function  protein binding  proteinaceous extracellular matrix  basal lamina  cell-cell junction  cell adhesion  biomineral tissue development  odontogenesis of dentin-containing tooth  positive regulation of biomineral tissue development  positive regulation of enamel mineralization  
Ontology : EGO-EBImolecular_function  protein binding  proteinaceous extracellular matrix  basal lamina  cell-cell junction  cell adhesion  biomineral tissue development  odontogenesis of dentin-containing tooth  positive regulation of biomineral tissue development  positive regulation of enamel mineralization  
NDEx NetworkAMTN
Atlas of Cancer Signalling NetworkAMTN
Wikipedia pathwaysAMTN
Orthology - Evolution
OrthoDB401138
GeneTree (enSembl)ENSG00000187689
Phylogenetic Trees/Animal Genes : TreeFamAMTN
HOVERGENQ6UX39
HOGENOMQ6UX39
Homologs : HomoloGeneAMTN
Homology/Alignments : Family Browser (UCSC)AMTN
Gene fusions - Rearrangements
Fusion: TCGALPHN3 AMTN
Fusion: TCGAMKLN1 AMTN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMTN
dbVarAMTN
ClinVarAMTN
1000_GenomesAMTN 
Exome Variant ServerAMTN
ExAC (Exome Aggregation Consortium)AMTN (select the gene name)
Genetic variants : HAPMAP401138
Genomic Variants (DGV)AMTN [DGVbeta]
DECIPHERAMTN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMTN 
Mutations
ICGC Data PortalAMTN 
TCGA Data PortalAMTN 
Broad Tumor PortalAMTN
OASIS PortalAMTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMTN
DgiDB (Drug Gene Interaction Database)AMTN
DoCM (Curated mutations)AMTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMTN (select a term)
intoGenAMTN
Cancer3DAMTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610912   
Orphanet
MedgenAMTN
Genetic Testing Registry AMTN
NextProtQ6UX39 [Medical]
TSGene401138
GENETestsAMTN
Target ValidationAMTN
Huge Navigator AMTN [HugePedia]
snp3D : Map Gene to Disease401138
BioCentury BCIQAMTN
ClinGenAMTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401138
Chemical/Pharm GKB GenePA162376390
Clinical trialAMTN
Miscellaneous
canSAR (ICR)AMTN (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMTN
EVEXAMTN
GoPubMedAMTN
iHOPAMTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:00 CEST 2017

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