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AMY1C (amylase, alpha 1C (salivary))

Identity

Alias_namesAMY1
amylase, alpha 1C; salivary
Other alias
HGNC (Hugo) AMY1C
LocusID (NCBI) 278
Atlas_Id 60282
Location 1p21.1  [Link to chromosome band 1p21]
Location_base_pair Starts at 103655650 and ends at 103664554 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMY1C   476
Cards
Entrez_Gene (NCBI)AMY1C  278  amylase, alpha 1C (salivary)
AliasesAMY1
GeneCards (Weizmann)AMY1C
Ensembl hg19 (Hinxton)ENSG00000187733 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187733 [Gene_View]  chr1:103655650-103664554 [Contig_View]  AMY1C [Vega]
ICGC DataPortalENSG00000187733
TCGA cBioPortalAMY1C
AceView (NCBI)AMY1C
Genatlas (Paris)AMY1C
WikiGenes278
SOURCE (Princeton)AMY1C
Genetics Home Reference (NIH)AMY1C
Genomic and cartography
GoldenPath hg38 (UCSC)AMY1C  -     chr1:103655650-103664554 +  1p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMY1C  -     1p21.1   [Description]    (hg19-Feb_2009)
EnsemblAMY1C - 1p21.1 [CytoView hg19]  AMY1C - 1p21.1 [CytoView hg38]
Mapping of homologs : NCBIAMY1C [Mapview hg19]  AMY1C [Mapview hg38]
OMIM104702   
Gene and transcription
Genbank (Entrez)AI687773 AK292341 AK313275 BC063129 BC069347
RefSeq transcript (Entrez)NM_001008219 NM_001346780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMY1C
Cluster EST : UnigeneHs.662103 [ NCBI ]
CGAP (NCI)Hs.662103
Alternative Splicing GalleryENSG00000187733
Gene ExpressionAMY1C [ NCBI-GEO ]   AMY1C [ EBI - ARRAY_EXPRESS ]   AMY1C [ SEEK ]   AMY1C [ MEM ]
Gene Expression Viewer (FireBrowse)AMY1C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)278
GTEX Portal (Tissue expression)AMY1C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04745   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04745  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04745
Splice isoforms : SwissVarP04745
PhosPhoSitePlusP04745
Domains : Interpro (EBI)A-amylase/branching_C    A-amylase_C    Alpha_amylase    Glyco_hydro_13_cat_dom    Glyco_hydro_b    Glyco_hydro_catalytic_dom    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Alpha-amylase (PF00128)    Alpha-amylase_C (PF02806)   
Domain families : Pfam (NCBI)pfam00128    pfam02806   
Domain families : Smart (EMBL)Aamy (SM00642)  Aamy_C (SM00632)  
Conserved Domain (NCBI)AMY1C
DMDM Disease mutations278
Blocks (Seattle)AMY1C
PDB (SRS)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
PDB (PDBSum)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
PDB (IMB)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
PDB (RSDB)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
Structural Biology KnowledgeBase1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
SCOP (Structural Classification of Proteins)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
CATH (Classification of proteins structures)1C8Q    1JXJ    1JXK    1MFU    1MFV    1NM9    1Q4N    1SMD    1XV8    1Z32    3BLK    3BLP    3DHP   
SuperfamilyP04745
Human Protein AtlasENSG00000187733
Peptide AtlasP04745
HPRD15911
Protein Interaction databases
DIP (DOE-UCLA)P04745
IntAct (EBI)P04745
FunCoupENSG00000187733
BioGRIDAMY1C
STRING (EMBL)AMY1C
ZODIACAMY1C
Ontologies - Pathways
QuickGOP04745
Ontology : AmiGOalpha-amylase activity  protein binding  extracellular space  carbohydrate metabolic process  digestion  metal ion binding  extracellular exosome  
Ontology : EGO-EBIalpha-amylase activity  protein binding  extracellular space  carbohydrate metabolic process  digestion  metal ion binding  extracellular exosome  
Pathways : KEGGStarch and sucrose metabolism    Salivary secretion    Carbohydrate digestion and absorption   
NDEx NetworkAMY1C
Atlas of Cancer Signalling NetworkAMY1C
Wikipedia pathwaysAMY1C
Orthology - Evolution
OrthoDB278
GeneTree (enSembl)ENSG00000187733
Phylogenetic Trees/Animal Genes : TreeFamAMY1C
HOVERGENP04745
HOGENOMP04745
Homologs : HomoloGeneAMY1C
Homology/Alignments : Family Browser (UCSC)AMY1C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMY1C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMY1C
dbVarAMY1C
ClinVarAMY1C
1000_GenomesAMY1C 
Exome Variant ServerAMY1C
ExAC (Exome Aggregation Consortium)AMY1C (select the gene name)
Genetic variants : HAPMAP278
Genomic Variants (DGV)AMY1C [DGVbeta]
DECIPHERAMY1C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMY1C 
Mutations
ICGC Data PortalAMY1C 
TCGA Data PortalAMY1C 
Broad Tumor PortalAMY1C
OASIS PortalAMY1C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMY1C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMY1C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMY1C
DgiDB (Drug Gene Interaction Database)AMY1C
DoCM (Curated mutations)AMY1C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMY1C (select a term)
intoGenAMY1C
Cancer3DAMY1C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104702   
Orphanet
MedgenAMY1C
Genetic Testing Registry AMY1C
NextProtP04745 [Medical]
TSGene278
GENETestsAMY1C
Huge Navigator AMY1C [HugePedia]
snp3D : Map Gene to Disease278
BioCentury BCIQAMY1C
ClinGenAMY1C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD278
Chemical/Pharm GKB GenePA24783
Clinical trialAMY1C
Miscellaneous
canSAR (ICR)AMY1C (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMY1C
EVEXAMY1C
GoPubMedAMY1C
iHOPAMY1C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 10:59:55 CEST 2017

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