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AMY2A (amylase, alpha 2A (pancreatic))

Identity

Alias_namesAMY2
amylase
Other aliasPA
HGNC (Hugo) AMY2A
LocusID (NCBI) 279
Atlas_Id 51645
Location 1p21.1  [Link to chromosome band 1p21]
Location_base_pair Starts at 103617332 and ends at 103625780 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMY2A   477
Cards
Entrez_Gene (NCBI)AMY2A  279  amylase, alpha 2A (pancreatic)
AliasesAMY2; PA
GeneCards (Weizmann)AMY2A
Ensembl hg19 (Hinxton)ENSG00000243480 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243480 [Gene_View]  chr1:103617332-103625780 [Contig_View]  AMY2A [Vega]
ICGC DataPortalENSG00000243480
TCGA cBioPortalAMY2A
AceView (NCBI)AMY2A
Genatlas (Paris)AMY2A
WikiGenes279
SOURCE (Princeton)AMY2A
Genetics Home Reference (NIH)AMY2A
Genomic and cartography
GoldenPath hg38 (UCSC)AMY2A  -     chr1:103617332-103625780 +  1p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMY2A  -     1p21.1   [Description]    (hg19-Feb_2009)
EnsemblAMY2A - 1p21.1 [CytoView hg19]  AMY2A - 1p21.1 [CytoView hg38]
Mapping of homologs : NCBIAMY2A [Mapview hg19]  AMY2A [Mapview hg38]
OMIM104650   
Gene and transcription
Genbank (Entrez)AK223463 AW873834 BC007060 BC146997 DQ892901
RefSeq transcript (Entrez)NM_000699
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMY2A
Cluster EST : UnigeneHs.654437 [ NCBI ]
CGAP (NCI)Hs.654437
Alternative Splicing GalleryENSG00000243480
Gene ExpressionAMY2A [ NCBI-GEO ]   AMY2A [ EBI - ARRAY_EXPRESS ]   AMY2A [ SEEK ]   AMY2A [ MEM ]
Gene Expression Viewer (FireBrowse)AMY2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)279
GTEX Portal (Tissue expression)AMY2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04746   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04746  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04746
Splice isoforms : SwissVarP04746
PhosPhoSitePlusP04746
Domains : Interpro (EBI)A-amylase/branching_C    A-amylase_C    Alpha_amylase    Glyco_hydro_13_cat_dom    Glyco_hydro_b    Glyco_hydro_catalytic_dom    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Alpha-amylase (PF00128)    Alpha-amylase_C (PF02806)   
Domain families : Pfam (NCBI)pfam00128    pfam02806   
Domain families : Smart (EMBL)Aamy (SM00642)  Aamy_C (SM00632)  
Conserved Domain (NCBI)AMY2A
DMDM Disease mutations279
Blocks (Seattle)AMY2A
PDB (SRS)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
PDB (PDBSum)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
PDB (IMB)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
PDB (RSDB)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
Structural Biology KnowledgeBase1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
SCOP (Structural Classification of Proteins)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
CATH (Classification of proteins structures)1B2Y    1BSI    1CPU    1HNY    1KB3    1KBB    1KBK    1KGU    1KGW    1KGX    1U2Y    1U30    1U33    1XCW    1XCX    1XD0    1XD1    1XGZ    1XH0    1XH1    1XH2    2CPU    2QMK    2QV4    3BAI    3BAJ    3BAK    3BAW    3BAX    3BAY    3CPU    3IJ7    3IJ8    3IJ9    3OLD    3OLE    3OLG    3OLI    4GQQ    4GQR    4W93    4X9Y    5E0F    5EMY    5TD4   
SuperfamilyP04746
Human Protein AtlasENSG00000243480
Peptide AtlasP04746
HPRD00094
Protein Interaction databases
DIP (DOE-UCLA)P04746
IntAct (EBI)P04746
FunCoupENSG00000243480
BioGRIDAMY2A
STRING (EMBL)AMY2A
ZODIACAMY2A
Ontologies - Pathways
QuickGOP04746
Ontology : AmiGOalpha-amylase activity  alpha-amylase activity  calcium ion binding  extracellular region  extracellular space  carbohydrate metabolic process  carbohydrate catabolic process  chloride ion binding  polysaccharide digestion  extracellular exosome  
Ontology : EGO-EBIalpha-amylase activity  alpha-amylase activity  calcium ion binding  extracellular region  extracellular space  carbohydrate metabolic process  carbohydrate catabolic process  chloride ion binding  polysaccharide digestion  extracellular exosome  
Pathways : KEGGStarch and sucrose metabolism    Pancreatic secretion    Carbohydrate digestion and absorption   
NDEx NetworkAMY2A
Atlas of Cancer Signalling NetworkAMY2A
Wikipedia pathwaysAMY2A
Orthology - Evolution
OrthoDB279
GeneTree (enSembl)ENSG00000243480
Phylogenetic Trees/Animal Genes : TreeFamAMY2A
HOVERGENP04746
HOGENOMP04746
Homologs : HomoloGeneAMY2A
Homology/Alignments : Family Browser (UCSC)AMY2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMY2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMY2A
dbVarAMY2A
ClinVarAMY2A
1000_GenomesAMY2A 
Exome Variant ServerAMY2A
ExAC (Exome Aggregation Consortium)AMY2A (select the gene name)
Genetic variants : HAPMAP279
Genomic Variants (DGV)AMY2A [DGVbeta]
DECIPHERAMY2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMY2A 
Mutations
ICGC Data PortalAMY2A 
TCGA Data PortalAMY2A 
Broad Tumor PortalAMY2A
OASIS PortalAMY2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMY2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMY2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMY2A
DgiDB (Drug Gene Interaction Database)AMY2A
DoCM (Curated mutations)AMY2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMY2A (select a term)
intoGenAMY2A
Cancer3DAMY2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104650   
Orphanet
MedgenAMY2A
Genetic Testing Registry AMY2A
NextProtP04746 [Medical]
TSGene279
GENETestsAMY2A
Target ValidationAMY2A
Huge Navigator AMY2A [HugePedia]
snp3D : Map Gene to Disease279
BioCentury BCIQAMY2A
ClinGenAMY2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD279
Chemical/Pharm GKB GenePA24784
Clinical trialAMY2A
Miscellaneous
canSAR (ICR)AMY2A (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMY2A
EVEXAMY2A
GoPubMedAMY2A
iHOPAMY2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:57:08 CEST 2017

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