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AMZ1 (archaelysin family metallopeptidase 1)

Identity

Alias_symbol (synonym)KIAA1950
Other alias-
HGNC (Hugo) AMZ1
LocusID (NCBI) 155185
Atlas_Id 60284
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 2688202 and ends at 2716529 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMZ1   22231
Cards
Entrez_Gene (NCBI)AMZ1  155185  archaelysin family metallopeptidase 1
Aliases
GeneCards (Weizmann)AMZ1
Ensembl hg19 (Hinxton)ENSG00000174945 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174945 [Gene_View]  chr7:2688202-2716529 [Contig_View]  AMZ1 [Vega]
ICGC DataPortalENSG00000174945
TCGA cBioPortalAMZ1
AceView (NCBI)AMZ1
Genatlas (Paris)AMZ1
WikiGenes155185
SOURCE (Princeton)AMZ1
Genetics Home Reference (NIH)AMZ1
Genomic and cartography
GoldenPath hg38 (UCSC)AMZ1  -     chr7:2688202-2716529 +  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMZ1  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblAMZ1 - 7p22.3 [CytoView hg19]  AMZ1 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIAMZ1 [Mapview hg19]  AMZ1 [Mapview hg38]
OMIM615168   
Gene and transcription
Genbank (Entrez)AB075830 AJ635357 AK092107 AK289723 AK295842
RefSeq transcript (Entrez)NM_001284355 NM_001321766 NM_133463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMZ1
Cluster EST : UnigeneHs.436046 [ NCBI ]
CGAP (NCI)Hs.436046
Alternative Splicing GalleryENSG00000174945
Gene ExpressionAMZ1 [ NCBI-GEO ]   AMZ1 [ EBI - ARRAY_EXPRESS ]   AMZ1 [ SEEK ]   AMZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)AMZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)155185
GTEX Portal (Tissue expression)AMZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ400G9   [function]  [subcellular_location]  [family_and_domainsİfnbqp; [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ400G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ400G9
Splice isoforms : SwissVarQ400G9
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusQ400G9
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)Pept_M54_archaemetzincn   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AMZ1
DMDM Disease mutations155185
Blocks (Seattle)AMZ1
SuperfamilyQ400G9
Human Protein AtlasENSG00000174945
Peptide AtlasQ400G9
HPRD17232
IPIIPI00291851   IPI00893136   
Protein Interaction databases
DIP (DOE-UCLA)Q400G9
IntAct (EBI)Q400G9
FunCoupENSG00000174945
BioGRIDAMZ1
STRING (EMBL)AMZ1
ZODIACAMZ1
Ontologies - Pathways
QuickGOQ400G9
Ontology : AmiGOproteolysis  metallopeptidase activity  zinc ion binding  
Ontology : EGO-EBIproteolysis  metallopeptidase activity  zinc ion binding  
NDEx NetworkAMZ1
Atlas of Cancer Signalling NetworkAMZ1
Wikipedia pathwaysAMZ1
Orthology - Evolution
OrthoDB155185
GeneTree (enSembl)ENSG00000174945
Phylogenetic Trees/Animal Genes : TreeFamAMZ1
HOVERGENQ400G9
HOGENOMQ400G9
Homologs : HomoloGeneAMZ1
Homology/Alignments : Family Browser (UCSC)AMZ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMZ1
dbVarAMZ1
ClinVarAMZ1
1000_GenomesAMZ1 
Exome Variant ServerAMZ1
ExAC (Exome Aggregation Consortium)AMZ1 (select the gene name)
Genetic variants : HAPMAP155185
Genomic Variants (DGV)AMZ1 [DGVbeta]
DECIPHERAMZ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMZ1 
Mutations
ICGC Data PortalAMZ1 
TCGA Data PortalAMZ1 
Broad Tumor PortalAMZ1
OASIS PortalAMZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMZ1
DgiDB (Drug Gene Interaction Database)AMZ1
DoCM (Curated mutations)AMZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMZ1 (select a term)
intoGenAMZ1
Cancer3DAMZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615168   
Orphanet
MedgenAMZ1
Genetic Testing Registry AMZ1
NextProtQ400G9 [Medical]
TSGene155185
GENETestsAMZ1
Target ValidationAMZ1
Huge Navigator AMZ1 [HugePedia]
snp3D : Map Gene to Disease155185
BioCentury BCIQAMZ1
ClinGenAMZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155185
Chemical/Pharm GKB GenePA162376413
Clinical trialAMZ1
Miscellaneous
canSAR (ICR)AMZ1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMZ1
EVEXAMZ1
GoPubMedAMZ1
iHOPAMZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:15 CEST 2017

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