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AMZ2 (archaelysin family metallopeptidase 2)

Identity

Other alias-
HGNC (Hugo) AMZ2
LocusID (NCBI) 51321
Atlas_Id 60285
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 68248004 and ends at 68257164 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AMZ2 (17q24.2) / SCAP (3p21.31)CCNDBP1 (15q15.2) / AMZ2 (17q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AMZ2   28041
Cards
Entrez_Gene (NCBI)AMZ2  51321  archaelysin family metallopeptidase 2
Aliases
GeneCards (Weizmann)AMZ2
Ensembl hg19 (Hinxton)ENSG00000196704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196704 [Gene_View]  chr17:68248004-68257164 [Contig_View]  AMZ2 [Vega]
ICGC DataPortalENSG00000196704
TCGA cBioPortalAMZ2
AceView (NCBI)AMZ2
Genatlas (Paris)AMZ2
WikiGenes51321
SOURCE (Princeton)AMZ2
Genetics Home Reference (NIH)AMZ2
Genomic and cartography
GoldenPath hg38 (UCSC)AMZ2  -     chr17:68248004-68257164 +  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AMZ2  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblAMZ2 - 17q24.2 [CytoView hg19]  AMZ2 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBIAMZ2 [Mapview hg19]  AMZ2 [Mapview hg38]
OMIM615169   
Gene and transcription
Genbank (Entrez)AJ635358 AK090981 AK126146 AW028610 BC035935
RefSeq transcript (Entrez)NM_001033569 NM_001033570 NM_001033571 NM_001033572 NM_001033574 NM_001289054 NM_001289056 NM_001346471 NM_001346472 NM_001346473 NM_001346474 NM_001346475 NM_001346476 NM_001346477 NM_001346478 NM_001346479 NM_001346480 NM_001346481 NM_001346482 NM_001346483 NM_001346484 NM_001346485 NM_016627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AMZ2
Cluster EST : UnigeneHs.293560 [ NCBI ]
CGAP (NCI)Hs.293560
Alternative Splicing GalleryENSG00000196704
Gene ExpressionAMZ2 [ NCBI-GEO ]   AMZ2 [ EBI - ARRAY_EXPRESS ]   AMZ2 [ SEEK ]   AMZ2 [ MEM ]
Gene Expression Viewer (FireBrowse)AMZ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51321
GTEX Portal (Tissue expression)AMZ2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86W34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86W34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86W34
Splice isoforms : SwissVarQ86W34
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusQ86W34
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)MetalloPept_cat_dom    Pept_M54_archaemetzincn   
Domain families : Pfam (Sanger)Peptidase_M54 (PF07998)   
Domain families : Pfam (NCBI)pfam07998   
Conserved Domain (NCBI)AMZ2
DMDM Disease mutations51321
Blocks (Seattle)AMZ2
SuperfamilyQ86W34
Human Protein AtlasENSG00000196704
Peptide AtlasQ86W34
HPRD14237
IPIIPI00010239   IPI00477265   
Protein Interaction databases
DIP (DOE-UCLA)Q86W34
IntAct (EBI)Q86W34
FunCoupENSG00000196704
BioGRIDAMZ2
STRING (EMBL)AMZ2
ZODIACAMZ2
Ontologies - Pathways
QuickGOQ86W34
Ontology : AmiGOproteolysis  metallopeptidase activity  zinc ion binding  
Ontology : EGO-EBIproteolysis  metallopeptidase activity  zinc ion binding  
NDEx NetworkAMZ2
Atlas of Cancer Signalling NetworkAMZ2
Wikipedia pathwaysAMZ2
Orthology - Evolution
OrthoDB51321
GeneTree (enSembl)ENSG00000196704
Phylogenetic Trees/Animal Genes : TreeFamAMZ2
HOVERGENQ86W34
HOGENOMQ86W34
Homologs : HomoloGeneAMZ2
Homology/Alignments : Family Browser (UCSC)AMZ2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAMZ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AMZ2
dbVarAMZ2
ClinVarAMZ2
1000_GenomesAMZ2 
Exome Variant ServerAMZ2
ExAC (Exome Aggregation Consortium)AMZ2 (select the gene name)
Genetic variants : HAPMAP51321
Genomic Variants (DGV)AMZ2 [DGVbeta]
DECIPHERAMZ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAMZ2 
Mutations
ICGC Data PortalAMZ2 
TCGA Data PortalAMZ2 
Broad Tumor PortalAMZ2
OASIS PortalAMZ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICAMZ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDAMZ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AMZ2
DgiDB (Drug Gene Interaction Database)AMZ2
DoCM (Curated mutations)AMZ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AMZ2 (select a term)
intoGenAMZ2
Cancer3DAMZ2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615169   
Orphanet
MedgenAMZ2
Genetic Testing Registry AMZ2
NextProtQ86W34 [Medical]
TSGene51321
GENETestsAMZ2
Huge Navigator AMZ2 [HugePedia]
snp3D : Map Gene to Disease51321
BioCentury BCIQAMZ2
ClinGenAMZ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51321
Chemical/Pharm GKB GenePA162376414
Clinical trialAMZ2
Miscellaneous
canSAR (ICR)AMZ2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAMZ2
EVEXAMZ2
GoPubMedAMZ2
iHOPAMZ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 10:59:56 CEST 2017

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